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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_17g734644v5   uncharacterized protein 
 ath-u.5   SQE2   squalene epoxidase 2 
 ath-u.5   SQE3   squalene epoxidase 3 
 ath-u.5   XF1   FAD/NAD(P)-binding oxidoreductase family protein 
 gma-u.5   100820031   squalene monooxygenase SE1 
 gma-u.5   100810547   squalene epoxidase 3 
 gma-u.5   100808856   squalene monooxygenase SE1 
 sly-u.5   112940012   squalene epoxidase 3-like 
 sly-u.5   SQO1   squalene monooxygenase 
 osa-u.5   4332152   squalene monooxygenase SE1 
 osa-u.5   4332153   squalene monooxygenase SE1 
 zma-u.5   100285558   uncharacterized LOC100285558 
 zma-u.5   100274333   uncharacterized LOC100274333 
 vvi-u.5   100854014   squalene monooxygenase SE2 
 vvi-u.5   100265235   squalene monooxygenase SE1 
 ppo-u.5   7497730   squalene monooxygenase SE1 
 mtr-u.5   25496080   squalene monooxygenase SE1 
 mtr-u.5   25496089   squalene monooxygenase SE1 
 mtr-u.5   25482032   squalene monooxygenase SE1 

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Top 50 coexpressed genes to CHLRE_17g734644v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_17g734644v5 (cre-r.1 coexpression data)

CoexMap"66057114"


creCHLRE_17g734644v5 | Entrez gene ID : 66057114    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 3 3 2 2 2 2 1 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre00100 [list] [network] Steroid biosynthesis (10 genes)
cre00909 [list] [network] Sesquiterpenoid and triterpenoid biosynthesis (2 genes)
GO BP
GO:0016126 [list] [network] sterol biosynthetic process  (6 genes)  IEA  
GO CC
GO:0005783 [list] [network] endoplasmic reticulum  (454 genes)  IEA  
GO:0016020 [list] [network] membrane  (1543 genes)  IEA  
GO MF
GO:0004506 [list] [network] squalene monooxygenase activity  (1 genes)  IEA  
GO:0050660 [list] [network] flavin adenine dinucleotide binding  (95 genes)  IEA  
Protein XP_042914968.1 [sequence] [blastp]
Subcellular
localization
wolf
E.R. 3,  nucl 2,  E.R._vacu 2,  cyto_E.R. 2  (predict for XP_042914968.1)
Subcellular
localization
TargetP
other 8  (predict for XP_042914968.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_17g734644v5

.
ath-u.5
for
SQE2

.
ath-u.5
for
SQE3

.
ath-u.5
for
XF1

.
gma-u.5
for
100820031

.
gma-u.5
for
100810547

.
gma-u.5
for
100808856

.
sly-u.5
for
112940012

.
sly-u.5
for
SQO1

.
osa-u.5
for
4332152

.
osa-u.5
for
4332153

.
zma-u.5
for
100285558

.
zma-u.5
for
100274333

.
vvi-u.5
for
100854014

.
vvi-u.5
for
100265235

.
ppo-u.5
for
7497730

.
mtr-u.5
for
25496080

.
mtr-u.5
for
25496089

.
mtr-u.5
for
25482032

.


Ortholog ID: 1909
Species ath ath gma gma sly osa osa zma zma bra bra vvi vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot sot bdi nta nta
Symbol SQE2 XF1 LOC100796946 LOC100810547 SQO1 LOC4332152 LOC4332153 LOC100285558 LOC100274333 LOC103857940 LOC103864397 LOC100265235 LOC100254037 LOC7497730 LOC25496080 LOC25496089 LOC123085101 LOC123098170 LOC123449244 LOC107938317 LOC107935261 LOC106432517 LOC106392124 CHLRE_17g734644v5 LOC8056854 LOC102585235 LOC102579136 LOC100839945 LOC107828762 LOC107771747
Function* squalene epoxidase 2 FAD/NAD(P)-binding oxidoreductase family protein squalene monooxygenase SE1 squalene epoxidase 3 squalene monooxygenase squalene monooxygenase SE1 squalene monooxygenase SE1 uncharacterized LOC100285558 uncharacterized LOC100274333 squalene epoxidase 3 squalene epoxidase 3 squalene monooxygenase SE1 squalene monooxygenase SE1 squalene monooxygenase SE1 squalene monooxygenase SE1 squalene monooxygenase SE1 squalene monooxygenase SE1 squalene monooxygenase SE1 squalene monooxygenase SE1-like squalene monooxygenase SE1 squalene epoxidase 3 squalene epoxidase 3 squalene epoxidase 2, mitochondrial uncharacterized protein squalene monooxygenase squalene epoxidase 3-like squalene monooxygenase-like squalene monooxygenase squalene monooxygenase SE1 squalene monooxygenase SE1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00100 Steroid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma02010 ABC transporters 4
gma04981 Folate transport and metabolism 4
gma00062 Fatty acid elongation 2
gma04626 Plant-pathogen interaction 2
gma00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 3
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00100 Steroid biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00100 Steroid biosynthesis 2
zma00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00061 Fatty acid biosynthesis 3
zma01212 Fatty acid metabolism 3
zma01040 Biosynthesis of unsaturated fatty acids 2
zma00100 Steroid biosynthesis 2
zma00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 2
bra00100 Steroid biosynthesis 2
bra00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 4
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 5
vvi01230 Biosynthesis of amino acids 3
vvi00670 One carbon pool by folate 3
vvi00620 Pyruvate metabolism 2
vvi00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 5
ppo01200 Carbon metabolism 3
ppo00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00909 Sesquiterpenoid and triterpenoid biosynthesis 8
mtr00999 Biosynthesis of various plant secondary metabolites 5
mtr00100 Steroid biosynthesis 3
mtr00062 Fatty acid elongation 2
mtr01040 Biosynthesis of unsaturated fatty acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00909 Sesquiterpenoid and triterpenoid biosynthesis 5
mtr00100 Steroid biosynthesis 3
mtr00999 Biosynthesis of various plant secondary metabolites 2
mtr00062 Fatty acid elongation 2
mtr01040 Biosynthesis of unsaturated fatty acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00564 Glycerophospholipid metabolism 3
tae00565 Ether lipid metabolism 3
tae04144 Endocytosis 3
tae00100 Steroid biosynthesis 3
tae00909 Sesquiterpenoid and triterpenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00564 Glycerophospholipid metabolism 3
tae00565 Ether lipid metabolism 3
tae04144 Endocytosis 3
tae00100 Steroid biosynthesis 3
tae00909 Sesquiterpenoid and triterpenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00940 Phenylpropanoid biosynthesis 8
hvu00360 Phenylalanine metabolism 5
hvu00941 Flavonoid biosynthesis 3
hvu00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
hvu00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00100 Steroid biosynthesis 5
ghi00909 Sesquiterpenoid and triterpenoid biosynthesis 5
ghi00040 Pentose and glucuronate interconversions 4
ghi00330 Arginine and proline metabolism 4
ghi00410 beta-Alanine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 5
ghi00941 Flavonoid biosynthesis 5
ghi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 5
ghi00100 Steroid biosynthesis 2
ghi00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00100 Steroid biosynthesis 4
bna00909 Sesquiterpenoid and triterpenoid biosynthesis 2
bna00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna00100 Steroid biosynthesis 2
bna00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00100 Steroid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00480 Glutathione metabolism 4
sbi00053 Ascorbate and aldarate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00860 Porphyrin metabolism 3
sot00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00999 Biosynthesis of various plant secondary metabolites 11
sot00100 Steroid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00100 Steroid biosynthesis 2
nta00909 Sesquiterpenoid and triterpenoid biosynthesis 2
nta00230 Purine metabolism 2
nta00920 Sulfur metabolism 2
nta01320 Sulfur cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00100 Steroid biosynthesis 2
nta00909 Sesquiterpenoid and triterpenoid biosynthesis 2
nta00230 Purine metabolism 2
nta00920 Sulfur metabolism 2
nta01320 Sulfur cycle 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816814 842213 100796946 100810547 101250012 4332152 4332153 100285558 100274333 103857940 103864397 100265235 100254037 7497730 25496080 25496089 123085101 123098170 123449244 107938317 107935261 106432517 106392124 66057114 8056854 102585235 102579136 100839945 107828762 107771747
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