ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8056854	squalene monooxygenase
zma-u.5	100285558	uncharacterized LOC100285558
zma-u.5	100274333	uncharacterized LOC100274333
osa-u.5	4332152	squalene monooxygenase SE1
osa-u.5	4332153	squalene monooxygenase SE1
ath-u.5	SQE2	squalene epoxidase 2
ath-u.5	SQE3	squalene epoxidase 3
ath-u.5	XF1	FAD/NAD(P)-binding oxidoreductase family protein
gma-u.5	100820031	squalene monooxygenase SE1
gma-u.5	100810547	squalene epoxidase 3
gma-u.5	100808856	squalene monooxygenase SE1
sly-u.5	112940012	squalene epoxidase 3-like
sly-u.5	SQO1	squalene monooxygenase
vvi-u.5	100854014	squalene monooxygenase SE2
vvi-u.5	100265235	squalene monooxygenase SE1
ppo-u.5	7497730	squalene monooxygenase SE1
ppo-u.5	18096264	squalene monooxygenase SE1
mtr-u.5	25496089	squalene monooxygenase SE1
mtr-u.5	11415396	squalene monooxygenase SE1
mtr-u.5	25490000	squalene monooxygenase SE1

Top 50 coexpressed genes to 8056854 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8056854 (sbi-r.1 coexpression data)

CoexMap"8056854"

[Cytoscape]

Annotation

functional annotation

KEGG

sbi00100 [list] [network] Steroid biosynthesis (54 genes)

sbi00909 [list] [network] Sesquiterpenoid and triterpenoid biosynthesis (16 genes)

GO BP

GO:0016126 [list] [network] sterol biosynthetic process

(28 genes)

IEA

GO CC

GO:0005783 [list] [network] endoplasmic reticulum	(492 genes)	IEA
GO:0016020 [list] [network] membrane	(3172 genes)	IEA

GO MF

GO:0004506 [list] [network] squalene monooxygenase activity	(1 genes)	IEA
GO:0050660 [list] [network] flavin adenine dinucleotide binding	(152 genes)	IEA

Protein

XP_002468222.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9

(predict for XP_002468222.1)

Subcellular
localization
TargetP

scret 8

(predict for XP_002468222.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8056854	zma-u.5 for 100285558	zma-u.5 for 100274333	osa-u.5 for 4332152	osa-u.5 for 4332153	ath-u.5 for SQE2	ath-u.5 for SQE3	ath-u.5 for XF1	gma-u.5 for 100820031	gma-u.5 for 100810547	gma-u.5 for 100808856	sly-u.5 for 112940012	sly-u.5 for SQO1	vvi-u.5 for 100854014	vvi-u.5 for 100265235	ppo-u.5 for 7497730	ppo-u.5 for 18096264	mtr-u.5 for 25496089	mtr-u.5 for 11415396	mtr-u.5 for 25490000

Ortholog

Ortholog ID: 1909

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

nta

cre

Symbol

SQE2

XF1

SQO1

Function^*

squalene monooxygenase

uncharacterized LOC100285558

uncharacterized LOC100274333

squalene monooxygenase SE1

squalene monooxygenase SE1-like

squalene monooxygenase

squalene epoxidase 2

FAD/NAD(P)-binding oxidoreductase family protein

squalene monooxygenase SE1

squalene epoxidase 3

squalene monooxygenase

squalene epoxidase 3

squalene monooxygenase SE1

squalene epoxidase 3

squalene epoxidase 2, mitochondrial

squalene epoxidase 3-like

squalene monooxygenase-like

squalene monooxygenase SE1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00480	Glutathione metabolism	4
sbi00053	Ascorbate and aldarate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00100	Steroid biosynthesis	2
zma00909	Sesquiterpenoid and triterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00061	Fatty acid biosynthesis	3
zma01212	Fatty acid metabolism	3
zma01040	Biosynthesis of unsaturated fatty acids	2
zma00100	Steroid biosynthesis	2
zma00909	Sesquiterpenoid and triterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00564	Glycerophospholipid metabolism	3
tae00565	Ether lipid metabolism	3
tae04144	Endocytosis	3
tae00100	Steroid biosynthesis	3
tae00909	Sesquiterpenoid and triterpenoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00564	Glycerophospholipid metabolism	3
tae00565	Ether lipid metabolism	3
tae04144	Endocytosis	3
tae00100	Steroid biosynthesis	3
tae00909	Sesquiterpenoid and triterpenoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00940	Phenylpropanoid biosynthesis	8
hvu00360	Phenylalanine metabolism	5
hvu00941	Flavonoid biosynthesis	3
hvu00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	3
hvu00130	Ubiquinone and other terpenoid-quinone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00100	Steroid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma02010	ABC transporters	4
gma04981	Folate transport and metabolism	4
gma00062	Fatty acid elongation	2
gma04626	Plant-pathogen interaction	2
gma00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	3
gma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00100	Steroid biosynthesis	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01200	Carbon metabolism	2
bra00100	Steroid biosynthesis	2
bra00909	Sesquiterpenoid and triterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	4
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01200	Carbon metabolism	5
vvi01230	Biosynthesis of amino acids	3
vvi00670	One carbon pool by folate	3
vvi00620	Pyruvate metabolism	2
vvi00260	Glycine, serine and threonine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00195	Photosynthesis	5
ppo01200	Carbon metabolism	3
ppo00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00909	Sesquiterpenoid and triterpenoid biosynthesis	8
mtr00999	Biosynthesis of various plant secondary metabolites	5
mtr00100	Steroid biosynthesis	3
mtr00062	Fatty acid elongation	2
mtr01040	Biosynthesis of unsaturated fatty acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00909	Sesquiterpenoid and triterpenoid biosynthesis	5
mtr00100	Steroid biosynthesis	3
mtr00999	Biosynthesis of various plant secondary metabolites	2
mtr00062	Fatty acid elongation	2
mtr01040	Biosynthesis of unsaturated fatty acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00100	Steroid biosynthesis	5
ghi00909	Sesquiterpenoid and triterpenoid biosynthesis	5
ghi00040	Pentose and glucuronate interconversions	4
ghi00330	Arginine and proline metabolism	4
ghi00410	beta-Alanine metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00940	Phenylpropanoid biosynthesis	5
ghi00941	Flavonoid biosynthesis	5
ghi00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	5
ghi00100	Steroid biosynthesis	2
ghi00909	Sesquiterpenoid and triterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00100	Steroid biosynthesis	4
bna00909	Sesquiterpenoid and triterpenoid biosynthesis	2
bna00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4
bna00100	Steroid biosynthesis	2
bna00909	Sesquiterpenoid and triterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00860	Porphyrin metabolism	3
sot00196	Photosynthesis - antenna proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00999	Biosynthesis of various plant secondary metabolites	11
sot00100	Steroid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00100	Steroid biosynthesis	2
nta00909	Sesquiterpenoid and triterpenoid biosynthesis	2
nta00230	Purine metabolism	2
nta00920	Sulfur metabolism	2
nta01320	Sulfur cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00100	Steroid biosynthesis	2
nta00909	Sesquiterpenoid and triterpenoid biosynthesis	2
nta00230	Purine metabolism	2
nta00920	Sulfur metabolism	2
nta01320	Sulfur cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00100	Steroid biosynthesis	4

Expression

Expression pattern

Entrez Gene ID^*

8056854

100285558

100274333

4332152

4332153

123085101

123098170

123449244

100839945

816814

842213

100796946

100810547

101250012

103857940

103864397

100265235

100254037

7497730

25496080

25496089

107938317

107935261

106432517

106392124

102585235

102579136

107828762

107771747

66057114

The preparation time of this page was 0.1 [sec].


Species	sbi	zma	osa	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	ghi	sot	nta	cre	tae
Paralog	1	2	2	3	3	2	2	2	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8056854 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8056854 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**