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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7471476   threonine--tRNA ligase, mitochondrial 1 
 ppo-r.4   7471476   threonine--tRNA ligase, mitochondrial 1 
 ppo-m.4   7471476   threonine--tRNA ligase, mitochondrial 1 
 ppo-u.5   18102530   threonine--tRNA ligase, mitochondrial 1-like 
 gma-u.5   100812652   threonine--tRNA ligase, mitochondrial 1 
 gma-u.5   100802879   threonine--tRNA ligase, mitochondrial 1 
 mtr-u.5   11405640   threonine--tRNA ligase, mitochondrial 1 
 ath-u.5   AT5G26830   Threonyl-tRNA synthetase 
 vvi-u.5   100265542   threonine--tRNA ligase, mitochondrial 1 
 vvi-u.5   100258303   threonine--tRNA ligase, mitochondrial 1 
 sly-u.5   101257168   threonine--tRNA ligase, mitochondrial 1 
 sly-u.5   101244106   threonine--tRNA ligase, mitochondrial 1-like 
 osa-u.5   4345200   threonine--tRNA ligase, mitochondrial 1 
 zma-u.5   103643444   threonine--tRNA ligase, mitochondrial 1 
 zma-u.5   103626016   threonine--tRNA ligase, mitochondrial-like 

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Top 50 coexpressed genes to 7471476 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7471476 (ppo-u.5 coexpression data)

CoexMap"7471476"


ppoLOC7471476 | Entrez gene ID : 7471476    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 2 1 1 2 2 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00970 [list] [network] Aminoacyl-tRNA biosynthesis (96 genes)
GO BP
GO:0006435 [list] [network] threonyl-tRNA aminoacylation  (3 genes)  IEA  
GO CC
GO:0005739 [list] [network] mitochondrion  (675 genes)  IEA  
GO:0009507 [list] [network] chloroplast  (718 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (6111 genes)  IEA  
GO MF
GO:0004829 [list] [network] threonine-tRNA ligase activity  (3 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2559 genes)  IEA  
Protein XP_002311580.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 2,  cyto 2,  cyto_nucl 2  (predict for XP_002311580.2)
Subcellular
localization
TargetP
mito 7,  chlo 4  (predict for XP_002311580.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7471476

.
ppo-r.4
for
7471476

.
ppo-m.4
for
7471476

.
ppo-u.5
for
18102530

.
gma-u.5
for
100812652

.
gma-u.5
for
100802879

.
mtr-u.5
for
11405640

.
ath-u.5
for
AT5G26830

.
vvi-u.5
for
100265542

.
vvi-u.5
for
100258303

.
sly-u.5
for
101257168

.
sly-u.5
for
101244106

.
osa-u.5
for
4345200

.
zma-u.5
for
103643444

.
zma-u.5
for
103626016

.


Ortholog ID: 5847
Species ath gma gma sly sly osa zma zma bra vvi vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit bdi nta nta
Symbol AT5G26830 LOC100802879 LOC100812652 LOC101244106 LOC101257168 LOC4345200 LOC103626016 LOC103643444 LOC103837192 LOC100265542 LOC100258303 LOC18102530 LOC7471476 LOC11405640 LOC123060089 LOC123068568 LOC123442662 LOC107935514 LOC107945257 LOC106396274 LOC106440346 CHLRE_06g273300v5 LOC8057195 LOC102584652 LOC102591931 LOC102627861 LOC100821121 LOC107789064 LOC107772352
Function* Threonyl-tRNA synthetase threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1-like threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial-like threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1-like threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1-like threonine--tRNA ligase, mitochondrial 1 uncharacterized protein threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1-like threonine--tRNA ligase, mitochondrial 1-like threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1-like threonine--tRNA ligase, mitochondrial 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 6
gma00190 Oxidative phosphorylation 4
gma01200 Carbon metabolism 2
gma00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 7
gma03008 Ribosome biogenesis in eukaryotes 3
gma04075 Plant hormone signal transduction 2
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 3
sly04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 3
sly03013 Nucleocytoplasmic transport 3
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 8
osa01230 Biosynthesis of amino acids 3
osa03013 Nucleocytoplasmic transport 2
osa03040 Spliceosome 2
osa00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 11
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 8
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 8
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
vvi00970 Aminoacyl-tRNA biosynthesis 4
vvi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
ppo03460 Fanconi anemia pathway 2
ppo03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 8
ppo00020 Citrate cycle (TCA cycle) 3
ppo01200 Carbon metabolism 3
ppo00300 Lysine biosynthesis 3
ppo01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 8
tae03013 Nucleocytoplasmic transport 4
tae03008 Ribosome biogenesis in eukaryotes 2
tae03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 6
ghi00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 6
ghi00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 7
bna03030 DNA replication 2
bna03410 Base excision repair 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 6
cre01230 Biosynthesis of amino acids 4
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
cre00290 Valine, leucine and isoleucine biosynthesis 2
cre01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
sbi00290 Valine, leucine and isoleucine biosynthesis 2
sbi00620 Pyruvate metabolism 2
sbi01210 2-Oxocarboxylic acid metabolism 2
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03015 mRNA surveillance pathway 3
sot00970 Aminoacyl-tRNA biosynthesis 3
sot03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
cit00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 5
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 9
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 9
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832741 100802879 100812652 101244106 101257168 4345200 103626016 103643444 103837192 100265542 100258303 18102530 7471476 11405640 123060089 123068568 123442662 107935514 107945257 106396274 106440346 5721795 8057195 102584652 102591931 102627861 100821121 107789064 107772352
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