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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8058905   pentatricopeptide repeat-containing protein At3g46790, chloroplastic 
 zma-u.5   114680592   uncharacterized LOC114680592 
 osa-u.5   4324854   pentatricopeptide repeat-containing protein CRR2, chloroplastic 
 ath-u.5   CRR2   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100790667   pentatricopeptide repeat-containing protein At3g46790, chloroplastic 
 gma-u.5   100792118   pentatricopeptide repeat-containing protein At3g46790, chloroplastic 
 sly-u.5   101258814   pentatricopeptide repeat-containing protein CRR2, chloroplastic 
 vvi-u.5   100262237   pentatricopeptide repeat-containing protein CRR2, chloroplastic 
 ppo-u.5   7481515   pentatricopeptide repeat-containing protein At3g46790, chloroplastic 
 mtr-u.5   11421145   pentatricopeptide repeat-containing protein At3g46790, chloroplastic 

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Top 50 coexpressed genes to 8058905 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8058905 (sbi-r.1 coexpression data)

CoexMap"8058905"


sbiLOC8058905 | Entrez gene ID : 8058905    
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (378 genes)  IEA  
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (824 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1243 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4172 genes)  IEA  
Protein XP_002458761.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  E.R. 1,  nucl 1,  cysk_nucl 1  (predict for XP_002458761.2)
Subcellular
localization
TargetP
chlo 5,  mito 3  (predict for XP_002458761.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8058905

.
zma-u.5
for
114680592

.
osa-u.5
for
4324854

.
ath-u.5
for
CRR2

.
gma-u.5
for
100790667

.
gma-u.5
for
100792118

.
sly-u.5
for
101258814

.
vvi-u.5
for
100262237

.
ppo-u.5
for
7481515

.
mtr-u.5
for
11421145

.


Ortholog ID: 10808
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol CRR2 LOC100792118 LOC100790667 LOC101258814 LOC4324854 LOC114680592 LOC103873844 LOC100262237 LOC7481515 LOC11421145 LOC123062593 LOC123079751 LOC123444898 LOC107950244 LOC107950319 LOC106376452 LOC106415670 LOC8058905 LOC102596453 LOC102620427 LOC100826221 LOC107817237 LOC107777050
Function* Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At3g46790, chloroplastic pentatricopeptide repeat-containing protein At3g46790, chloroplastic pentatricopeptide repeat-containing protein CRR2, chloroplastic pentatricopeptide repeat-containing protein CRR2, chloroplastic uncharacterized LOC114680592 pentatricopeptide repeat-containing protein At3g46790, chloroplastic pentatricopeptide repeat-containing protein CRR2, chloroplastic pentatricopeptide repeat-containing protein At3g46790, chloroplastic pentatricopeptide repeat-containing protein At3g46790, chloroplastic pentatricopeptide repeat-containing protein At3g46790, chloroplastic pentatricopeptide repeat-containing protein At3g46790, chloroplastic pentatricopeptide repeat-containing protein At3g46790, chloroplastic pentatricopeptide repeat-containing protein At3g46790, chloroplastic pentatricopeptide repeat-containing protein At3g46790, chloroplastic pentatricopeptide repeat-containing protein At3g46790, chloroplastic pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like pentatricopeptide repeat-containing protein At3g46790, chloroplastic pentatricopeptide repeat-containing protein At3g46790, chloroplastic pentatricopeptide repeat-containing protein At3g46790, chloroplastic pentatricopeptide repeat-containing protein At3g46790, chloroplastic pentatricopeptide repeat-containing protein CRR2, chloroplastic pentatricopeptide repeat-containing protein CRR2, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 3
bra00260 Glycine, serine and threonine metabolism 2
bra00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 823832 100792118 100790667 101258814 4324854 114680592 103873844 100262237 7481515 11421145 123062593 123079751 123444898 107950244 107950319 106376452 106415670 8058905 102596453 102620427 100826221 107817237 107777050
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