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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PTB1   polypyrimidine tract-binding protein 1 
 ath-r.7   PTB1   polypyrimidine tract-binding protein 1 
 ath-m.9   PTB1   polypyrimidine tract-binding protein 1 
 ath-e.2   PTB1   polypyrimidine tract-binding protein 1 
 ath-m.4.bio   PTB1   polypyrimidine tract-binding protein 1 
 ath-m.4.hor   PTB1   polypyrimidine tract-binding protein 1 
 ath-m.4.lig   PTB1   polypyrimidine tract-binding protein 1 
 ath-m.4.str   PTB1   polypyrimidine tract-binding protein 1 
 ath-m.4.tis   PTB1   polypyrimidine tract-binding protein 1 
 bra-r.6   103870954   polypyrimidine tract-binding protein homolog 1 
 bna-r.1   125574894   polypyrimidine tract-binding protein homolog 1 
 bna-r.1   106453255   polypyrimidine tract-binding protein homolog 1 
 ghi-r.1   107949175   polypyrimidine tract-binding protein homolog 1 
 ghi-r.1   107888583   polypyrimidine tract-binding protein homolog 1 
 ghi-r.1   107890457   polypyrimidine tract-binding protein homolog 1 
 cit-r.1   102618721   polypyrimidine tract-binding protein homolog 1 
 gma-u.5   100792308   polypyrimidine tract-binding protein homolog 1 
 gma-u.5   100788927   polypyrimidine tract-binding protein homolog 1 
 vvi-u.5   100266445   polypyrimidine tract-binding protein homolog 1 
 ppo-u.5   18097705   polypyrimidine tract-binding protein homolog 1 
 ppo-u.5   7495985   polypyrimidine tract-binding protein homolog 1 
 mtr-u.5   11420325   polypyrimidine tract-binding protein homolog 1 
 sly-u.5   101251347   polypyrimidine tract-binding protein homolog 1 
 sot-r.1   PTB7   polypyrimidine tract-binding protein homolog 1-like 
 nta-r.1   107787487   polypyrimidine tract-binding protein homolog 1 
 nta-r.1   107804795   polypyrimidine tract-binding protein homolog 1 
 osa-u.5   4332960   polypyrimidine tract-binding protein homolog 1 
 osa-u.5   4345664   polypyrimidine tract-binding protein homolog 1 
 zma-u.5   103653473   polypyrimidine tract-binding protein homolog 1 
 zma-u.5   100381791   uncharacterized LOC100381791 
 zma-u.5   100275742   uncharacterized LOC100275742 
 tae-r.2   123085922   polypyrimidine tract-binding protein homolog 1 
 tae-r.2   123091964   polypyrimidine tract-binding protein homolog 1 
 tae-r.2   123097400   polypyrimidine tract-binding protein homolog 1 
 hvu-r.1   123413547   polypyrimidine tract-binding protein homolog 1-like 
 hvu-r.1   123448524   polypyrimidine tract-binding protein homolog 1-like 
 sbi-r.1   8080760   polypyrimidine tract-binding protein homolog 1 
 sbi-r.1   8075667   polypyrimidine tract-binding protein homolog 1 
 bdi-r.1   100836521   polypyrimidine tract-binding protein homolog 1 
 bdi-r.1   100829820   polypyrimidine tract-binding protein homolog 1 

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Top 50 coexpressed genes to PTB1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PTB1 (ath-u.5 coexpression data)

CoexMap"821129"


athPTB1 | Entrez gene ID : 821129      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 3 1 2 1 2 1 1 1 2 2 3 3 2 2 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000381 [list] [network] regulation of alternative mRNA splicing, via spliceosome  (8 genes)  IMP  
GO:0043484 [list] [network] regulation of RNA splicing  (22 genes)  IDA  
GO:0006417 [list] [network] regulation of translation  (32 genes)  IEP  
GO:0009846 [list] [network] pollen germination  (77 genes)  IGI  
GO:0009845 [list] [network] seed germination  (111 genes)  IMP  
GO CC
GO:0000932 [list] [network] P-body  (34 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  HDA IDA ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  HDA IDA  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_001319439.1 [sequence] [blastp]
NP_001327636.1 [sequence] [blastp]
NP_001327637.1 [sequence] [blastp]
NP_186764.1 [sequence] [blastp]
Subcellular
localization
wolf
extr 6,  chlo 2,  mito 1,  E.R. 1,  pero 1  (predict for NP_001319439.1)
extr 6,  chlo 2,  nucl 1,  mito 1  (predict for NP_001327636.1)
chlo 6,  mito 3,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for NP_001327637.1)
chlo 5,  nucl 2,  mito 2  (predict for NP_186764.1)
Subcellular
localization
TargetP
scret 8  (predict for NP_001319439.1)
scret 8  (predict for NP_001327636.1)
other 6  (predict for NP_001327637.1)
other 6  (predict for NP_186764.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PTB1
ath-r.7
for
PTB1
ath-m.9
for
PTB1
ath-e.2
for
PTB1
ath-m.4.bio
for
PTB1
ath-m.4.hor
for
PTB1
ath-m.4.lig
for
PTB1
ath-m.4.str
for
PTB1
ath-m.4.tis
for
PTB1
bra-r.6
for
103870954
bna-r.1
for
125574894
bna-r.1
for
106453255
ghi-r.1
for
107949175
ghi-r.1
for
107888583
ghi-r.1
for
107890457
cit-r.1
for
102618721
gma-u.5
for
100792308
gma-u.5
for
100788927
vvi-u.5
for
100266445
ppo-u.5
for
18097705
ppo-u.5
for
7495985
mtr-u.5
for
11420325
sly-u.5
for
101251347
sot-r.1
for
PTB7
nta-r.1
for
107787487
nta-r.1
for
107804795
osa-u.5
for
4332960
osa-u.5
for
4345664
zma-u.5
for
103653473
zma-u.5
for
100381791
zma-u.5
for
100275742
tae-r.2
for
123085922
tae-r.2
for
123091964
tae-r.2
for
123097400
hvu-r.1
for
123413547
hvu-r.1
for
123448524
sbi-r.1
for
8080760
sbi-r.1
for
8075667
bdi-r.1
for
100836521
bdi-r.1
for
100829820


Ortholog ID: 5515
Species ath bra bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa osa zma zma zma tae tae tae hvu hvu sbi sbi bdi bdi
Symbol PTB1 LOC103870954 LOC125574894 LOC106453255 LOC107949175 LOC107890457 LOC107937415 LOC102618721 LOC100792308 LOC100788927 LOC100266445 LOC18097705 LOC7495985 LOC11420325 LOC101251347 PTB7 LOC107787487 LOC107804795 LOC4332960 LOC4345664 LOC103653473 LOC100381791 LOC100275742 LOC123097400 LOC123160611 LOC123168850 LOC123413547 LOC123448524 LOC8080760 LOC8075667 LOC100836521 LOC100829820
Function* polypyrimidine tract-binding protein 1 polypyrimidine tract-binding protein homolog 1 polypyrimidine tract-binding protein homolog 1 polypyrimidine tract-binding protein homolog 1 polypyrimidine tract-binding protein homolog 1 polypyrimidine tract-binding protein homolog 1 polypyrimidine tract-binding protein homolog 1 polypyrimidine tract-binding protein homolog 1 polypyrimidine tract-binding protein homolog 1 polypyrimidine tract-binding protein homolog 1 polypyrimidine tract-binding protein homolog 1 polypyrimidine tract-binding protein homolog 1 polypyrimidine tract-binding protein homolog 1 polypyrimidine tract-binding protein homolog 1 polypyrimidine tract-binding protein homolog 1 polypyrimidine tract-binding protein homolog 1-like polypyrimidine tract-binding protein homolog 1 polypyrimidine tract-binding protein homolog 1 polypyrimidine tract-binding protein homolog 1 polypyrimidine tract-binding protein homolog 1 polypyrimidine tract-binding protein homolog 1 uncharacterized LOC100381791 uncharacterized LOC100275742 polypyrimidine tract-binding protein homolog 1 polypyrimidine tract-binding protein homolog 1 polypyrimidine tract-binding protein homolog 1 polypyrimidine tract-binding protein homolog 1-like polypyrimidine tract-binding protein homolog 1-like polypyrimidine tract-binding protein homolog 1 polypyrimidine tract-binding protein homolog 1 polypyrimidine tract-binding protein homolog 1 polypyrimidine tract-binding protein homolog 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 6
ath04141 Protein processing in endoplasmic reticulum 2
ath03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03022 Basal transcription factors 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 7
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 8
gma03008 Ribosome biogenesis in eukaryotes 2
gma03083 Polycomb repressive complex 2
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
vvi00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 4
sot03040 Spliceosome 4
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 5
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00010 Glycolysis / Gluconeogenesis 5
tae00620 Pyruvate metabolism 5
tae01200 Carbon metabolism 5
tae01230 Biosynthesis of amino acids 5
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
tae05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 5
tae03013 Nucleocytoplasmic transport 3
tae05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821129 103870954 125574894 106453255 107949175 107890457 107937415 102618721 100792308 100788927 100266445 18097705 7495985 11420325 101251347 102580655 107787487 107804795 4332960 4345664 103653473 100381791 100275742 123097400 123160611 123168850 123413547 123448524 8080760 8075667 100836521 100829820
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