ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	AT4G10110	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-r.7	AT4G10110	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-e.2	AT4G10110	RNA-binding (RRM/RBD/RNP motifs) family protein
gma-u.5	100803118	splicing factor 3B subunit 4
gma-u.5	100784532	splicing factor 3B subunit 4-like
vvi-u.5	100252755	hypothetical protein
vvi-u.5	100244774	uncharacterized LOC100244774
ppo-u.5	18108414	uncharacterized LOC18108414
mtr-u.5	11408527	RNA-binding protein 7
sly-u.5	101258326	uncharacterized LOC101258326
osa-u.5	4338860	uncharacterized LOC4338860
osa-u.5	107277261	uncharacterized LOC107277261
zma-u.5	100384862	RNA recognition motif-containing protein
zma-u.5	103650933	splicing factor 3B subunit 4
zma-u.5	100193321	uncharacterized LOC100193321

Annotation

functional annotation

KEGG

ath03040 [list] [network] Spliceosome (243 genes)

GO BP

GO CC

GO:0062141 [list] [network] nuclear exosome targeting complex	(3 genes)	ISS
GO:0005634 [list] [network] nucleus	(10367 genes)	ISM

GO MF

Protein

NP_192749.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, cyto_nucl 5

(predict for NP_192749.2)

Subcellular
localization
TargetP

other 8

(predict for NP_192749.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT4G10110	ath-r.7 for AT4G10110	ath-e.2 for AT4G10110	gma-u.5 for 100803118	gma-u.5 for 100784532	vvi-u.5 for 100252755	vvi-u.5 for 100244774	ppo-u.5 for 18108414	mtr-u.5 for 11408527	sly-u.5 for 101258326	osa-u.5 for 4338860	osa-u.5 for 107277261	zma-u.5 for 100384862	zma-u.5 for 103650933	zma-u.5 for 100193321

Ortholog

Ortholog ID: 6296

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

RNA-binding (RRM/RBD/RNP motifs) family protein

RNA-binding protein 7

spliceosome-associated protein 49

splicing factor 3B subunit 4

RNA-binding protein 7

uncharacterized LOC102612062

splicing factor 3B subunit 4

splicing factor 3B subunit 4-like

uncharacterized LOC100244774

hypothetical protein

uncharacterized LOC18108414

RNA-binding protein 7

uncharacterized LOC101258326

splicing factor 3B subunit 4

uncharacterized LOC107816527

uncharacterized LOC107806640

uncharacterized LOC4338860

uncharacterized LOC107277261

uncharacterized LOC100193321

RNA recognition motif-containing protein

splicing regulator RBM11

RNA-binding protein 7

splicing regulator RBM11-like

spliceosome-associated protein 49

splicing factor 3B subunit 4-like

spliceosome-associated protein 49

splicing regulator RBM11

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00510	N-Glycan biosynthesis	5
bna00513	Various types of N-glycan biosynthesis	5
bna04141	Protein processing in endoplasmic reticulum	5
bna03040	Spliceosome	2
bna00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00510	N-Glycan biosynthesis	3
bna00513	Various types of N-glycan biosynthesis	3
bna04141	Protein processing in endoplasmic reticulum	3
bna00270	Cysteine and methionine metabolism	2
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	4
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	4
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04016	MAPK signaling pathway - plant	2
cit04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00564	Glycerophospholipid metabolism	3
sot00440	Phosphonate and phosphinate metabolism	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	4
nta03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	4
nta03015	mRNA surveillance pathway	2
nta03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	3
zma04120	Ubiquitin mediated proteolysis	3
zma04141	Protein processing in endoplasmic reticulum	2
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	6
zma03040	Spliceosome	3
zma04141	Protein processing in endoplasmic reticulum	2
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	2
tae04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	2
hvu04141	Protein processing in endoplasmic reticulum	2
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	8
bdi04145	Phagosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	3
bdi03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

826602

103838899

106359693

106439150

121216283

107959793

102612062

100803118

100784532

100244774

100252755

18108414

11408527

101258326

102602409

107816527

107806640

4338860

107277261

100193321

100384862

123079955

123182104

123444750

123443116

110430206

100841208

104582652

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT4G10110 (ath-u.5 coexpression data)

Top 50 enrichment test to AT4G10110 (ath-u.5 coexpression data)


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	3	2	2	1	1	1	2	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT4G10110 (ath-u.5 coexpression data)

Top 50 enrichment test to AT4G10110 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**