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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   EMB2279   pentatricopeptide (PPR) repeat-containing protein 
 ath-r.7   EMB2279   pentatricopeptide (PPR) repeat-containing protein 
 ath-m.9   EMB2279   pentatricopeptide (PPR) repeat-containing protein 
 ath-e.2   EMB2279   pentatricopeptide (PPR) repeat-containing protein 
 ath-m.4.bio   EMB2279   pentatricopeptide (PPR) repeat-containing protein 
 ath-m.4.hor   EMB2279   pentatricopeptide (PPR) repeat-containing protein 
 ath-m.4.lig   EMB2279   pentatricopeptide (PPR) repeat-containing protein 
 ath-m.4.str   EMB2279   pentatricopeptide (PPR) repeat-containing protein 
 ath-m.4.tis   EMB2279   pentatricopeptide (PPR) repeat-containing protein 
 bna-r.1   106367257   pentatricopeptide repeat-containing protein At1g30610, chloroplastic 
 bna-r.1   106411276   pentatricopeptide repeat-containing protein At1g30610, chloroplastic 
 ghi-r.1   107936372   pentatricopeptide repeat-containing protein At1g30610, chloroplastic 
 ghi-r.1   107931850   pentatricopeptide repeat-containing protein At1g30610, chloroplastic 
 cit-r.1   102628683   pentatricopeptide repeat-containing protein At1g30610, chloroplastic 
 gma-u.5   100787028   pentatricopeptide repeat-containing protein At1g30610, chloroplastic 
 vvi-u.5   100250871   pentatricopeptide repeat-containing protein At1g30610, chloroplastic 
 ppo-u.5   7490754   pentatricopeptide repeat-containing protein At1g30610, chloroplastic 
 mtr-u.5   25479292   pentatricopeptide repeat-containing protein At1g30610, chloroplastic 
 sly-u.5   101268344   pentatricopeptide repeat-containing protein At1g30610, chloroplastic 
 sot-r.1   102582413   pentatricopeptide repeat-containing protein At1g30610, chloroplastic 
 nta-r.1   107803983   pentatricopeptide repeat-containing protein At1g30610, chloroplastic 
 nta-r.1   107772647   pentatricopeptide repeat-containing protein At1g30610, chloroplastic-like 
 osa-u.5   4325508   pentatricopeptide repeat-containing protein At1g30610, chloroplastic 
 zma-u.5   103636169   pentatricopeptide repeat-containing protein At1g30610, chloroplastic 
 tae-r.2   123078999   pentatricopeptide repeat-containing protein At1g30610, chloroplastic 
 tae-r.2   123070592   pentatricopeptide repeat-containing protein At1g30610, chloroplastic 
 tae-r.2   123061903   pentatricopeptide repeat-containing protein At1g30610, chloroplastic 
 hvu-r.1   123444089   pentatricopeptide repeat-containing protein At1g30610, chloroplastic 
 sbi-r.1   8068006   pentatricopeptide repeat-containing protein At1g30610, chloroplastic 
 bdi-r.1   100829792   pentatricopeptide repeat-containing protein At1g30610, chloroplastic 

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Top 50 coexpressed genes to EMB2279 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to EMB2279 (ath-u.5 coexpression data)

CoexMap""


athEMB2279 | Entrez gene ID : 839941      
Species ath bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre bra
Paralog 9 2 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
Function pentatricopeptide (PPR) repeat-containing protein
KEGG
GO BP
GO:0010239 [list] [network] chloroplast mRNA processing  (12 genes)  IMP  
GO:0010098 [list] [network] suspensor development  (14 genes)  IMP  
GO:0009658 [list] [network] chloroplast organization  (197 genes)  IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  IMP NAS TAS  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_001185117.1 [sequence] [blastp]
NP_174349.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 3  (predict for NP_001185117.1)
nucl 6,  chlo 4  (predict for NP_174349.1)
Subcellular
localization
TargetP
chlo 6  (predict for NP_001185117.1)
chlo 6  (predict for NP_174349.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
EMB2279
ath-r.7
for
EMB2279
ath-m.9
for
EMB2279
ath-e.2
for
EMB2279
ath-m.4.bio
for
EMB2279
ath-m.4.hor
for
EMB2279
ath-m.4.lig
for
EMB2279
ath-m.4.str
for
EMB2279
ath-m.4.tis
for
EMB2279
bna-r.1
for
106367257
bna-r.1
for
106411276
ghi-r.1
for
107936372
ghi-r.1
for
107931850
cit-r.1
for
102628683
gma-u.5
for
100787028
vvi-u.5
for
100250871
ppo-u.5
for
7490754
mtr-u.5
for
25479292
sly-u.5
for
101268344
sot-r.1
for
102582413
nta-r.1
for
107803983
nta-r.1
for
107772647
osa-u.5
for
4325508
zma-u.5
for
103636169
tae-r.2
for
123078999
tae-r.2
for
123070592
tae-r.2
for
123061903
hvu-r.1
for
123444089
sbi-r.1
for
8068006
bdi-r.1
for
100829792

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Ortholog ID: 11492
Species ath bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol EMB2279 LOC106367257 LOC106411276 LOC107936372 LOC107931850 LOC102628683 LOC100787028 LOC100250871 LOC7490754 LOC25479292 LOC101268344 LOC102582413 LOC107803983 LOC107772647 LOC4325508 LOC103636169 LOC123078999 LOC123070592 LOC123061903 LOC123444089 LOC8068006 LOC100829792
Function* pentatricopeptide (PPR) repeat-containing protein pentatricopeptide repeat-containing protein At1g30610, chloroplastic pentatricopeptide repeat-containing protein At1g30610, chloroplastic pentatricopeptide repeat-containing protein At1g30610, chloroplastic pentatricopeptide repeat-containing protein At1g30610, chloroplastic pentatricopeptide repeat-containing protein At1g30610, chloroplastic pentatricopeptide repeat-containing protein At1g30610, chloroplastic pentatricopeptide repeat-containing protein At1g30610, chloroplastic pentatricopeptide repeat-containing protein At1g30610, chloroplastic pentatricopeptide repeat-containing protein At1g30610, chloroplastic pentatricopeptide repeat-containing protein At1g30610, chloroplastic pentatricopeptide repeat-containing protein At1g30610, chloroplastic pentatricopeptide repeat-containing protein At1g30610, chloroplastic pentatricopeptide repeat-containing protein At1g30610, chloroplastic-like pentatricopeptide repeat-containing protein At1g30610, chloroplastic pentatricopeptide repeat-containing protein At1g30610, chloroplastic pentatricopeptide repeat-containing protein At1g30610, chloroplastic pentatricopeptide repeat-containing protein At1g30610, chloroplastic pentatricopeptide repeat-containing protein At1g30610, chloroplastic pentatricopeptide repeat-containing protein At1g30610, chloroplastic pentatricopeptide repeat-containing protein At1g30610, chloroplastic pentatricopeptide repeat-containing protein At1g30610, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 3
bna01240 Biosynthesis of cofactors 3
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 3
bna01240 Biosynthesis of cofactors 3
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 4
sot03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03410 Base excision repair 3
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839941 106367257 106411276 107936372 107931850 102628683 100787028 100250871 7490754 25479292 101268344 102582413 107803983 107772647 4325508 103636169 123078999 123070592 123061903 123444089 8068006 100829792
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