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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT1G48280   hydroxyproline-rich glycoprotein family protein 
 ath-r.7   AT1G48280   hydroxyproline-rich glycoprotein family protein 
 ath-m.9   AT1G48280   hydroxyproline-rich glycoprotein family protein 
 ath-e.2   AT1G48280   hydroxyproline-rich glycoprotein family protein 
 ath-m.4.bio   AT1G48280   hydroxyproline-rich glycoprotein family protein 
 ath-m.4.hor   AT1G48280   hydroxyproline-rich glycoprotein family protein 
 ath-m.4.lig   AT1G48280   hydroxyproline-rich glycoprotein family protein 
 ath-m.4.str   AT1G48280   hydroxyproline-rich glycoprotein family protein 
 ath-m.4.tis   AT1G48280   hydroxyproline-rich glycoprotein family protein 
 bra-r.6   103871479   protein CHUP1, chloroplastic 
 bna-r.1   106346417   protein CHUP1, chloroplastic 
 bna-r.1   106353813   protein CHUP1, chloroplastic-like 
 ghi-r.1   107910512   protein CHUP1, chloroplastic 
 ghi-r.1   107951552   protein CHUP1, chloroplastic 
 cit-r.1   102609433   protein CHUP1, chloroplastic 
 gma-u.5   100809254   protein CHUP1, chloroplastic 
 gma-u.5   100820135   protein CHUP1, chloroplastic 
 gma-u.5   100820086   uncharacterized LOC100820086 
 vvi-u.5   100256278   protein CHUP1, chloroplastic 
 ppo-u.5   7496486   protein CHUP1, chloroplastic 
 mtr-u.5   11421894   protein CHUP1, chloroplastic 
 zma-u.5   100273374   Tetratricopeptide repeat (TPR)-like superfamily protein 
 tae-r.2   123096704   protein CHUP1, chloroplastic 
 tae-r.2   123091722   protein CHUP1, chloroplastic 
 tae-r.2   123086291   protein CHUP1, chloroplastic 
 hvu-r.1   123448125   protein CHUP1, chloroplastic-like 
 sbi-r.1   8155620   protein CHUP1, chloroplastic 
 bdi-r.1   100841367   protein CHUP1, chloroplastic 

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Top 50 coexpressed genes to AT1G48280 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G48280 (ath-u.5 coexpression data)

CoexMap"841248"


athAT1G48280 | Entrez gene ID : 841248      
Species ath bra bna ghi cit gma vvi ppo mtr zma tae hvu sbi bdi sot sly nta osa cre
Paralog 9 1 2 2 1 3 1 1 1 1 3 1 1 1 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0055028 [list] [network] cortical microtubule  (50 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
GO:0008017 [list] [network] microtubule binding  (99 genes)  IDA  
Protein NP_564524.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 2,  mito 1,  cysk_nucl 1  (predict for NP_564524.1)
Subcellular
localization
TargetP
mito 4,  chlo 4  (predict for NP_564524.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT1G48280
ath-r.7
for
AT1G48280
ath-m.9
for
AT1G48280
ath-e.2
for
AT1G48280
ath-m.4.bio
for
AT1G48280
ath-m.4.hor
for
AT1G48280
ath-m.4.lig
for
AT1G48280
ath-m.4.str
for
AT1G48280
ath-m.4.tis
for
AT1G48280
bra-r.6
for
103871479
bna-r.1
for
106346417
bna-r.1
for
106353813
ghi-r.1
for
107910512
ghi-r.1
for
107951552
cit-r.1
for
102609433
gma-u.5
for
100809254
gma-u.5
for
100820135
gma-u.5
for
100820086
vvi-u.5
for
100256278
ppo-u.5
for
7496486
mtr-u.5
for
11421894
zma-u.5
for
100273374
tae-r.2
for
123096704
tae-r.2
for
123091722
tae-r.2
for
123086291
hvu-r.1
for
123448125
sbi-r.1
for
8155620
bdi-r.1
for
100841367


Ortholog ID: 12039
Species ath bra bna bna ghi ghi cit gma gma gma vvi ppo mtr zma tae tae tae hvu sbi bdi
Symbol AT1G48280 LOC103871479 LOC106346417 LOC106353813 LOC107910512 LOC107951552 LOC102609433 LOC100809254 LOC100820135 LOC100820086 LOC100256278 LOC7496486 LOC11421894 LOC100273374 LOC123096704 LOC123091722 LOC123086291 LOC123448125 LOC8155620 LOC100841367
Function* hydroxyproline-rich glycoprotein family protein protein CHUP1, chloroplastic protein CHUP1, chloroplastic protein CHUP1, chloroplastic-like protein CHUP1, chloroplastic protein CHUP1, chloroplastic protein CHUP1, chloroplastic protein CHUP1, chloroplastic protein CHUP1, chloroplastic uncharacterized LOC100820086 protein CHUP1, chloroplastic protein CHUP1, chloroplastic protein CHUP1, chloroplastic Tetratricopeptide repeat (TPR)-like superfamily protein protein CHUP1, chloroplastic protein CHUP1, chloroplastic protein CHUP1, chloroplastic protein CHUP1, chloroplastic-like protein CHUP1, chloroplastic protein CHUP1, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 3
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00010 Glycolysis / Gluconeogenesis 3
tae00620 Pyruvate metabolism 3
tae00630 Glyoxylate and dicarboxylate metabolism 3
tae00640 Propanoate metabolism 3
tae01200 Carbon metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841248 103871479 106346417 106353813 107910512 107951552 102609433 100809254 100820135 100820086 100256278 7496486 11421894 100273374 123096704 123091722 123086291 123448125 8155620 100841367
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