Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.4   PCNA2   proliferating cell nuclear antigen 2 
 ath-r.6   PCNA2   proliferating cell nuclear antigen 2 
 ath-m.9   PCNA2   proliferating cell nuclear antigen 2 
 ath-m.4.notissue   PCNA2   proliferating cell nuclear antigen 2 
 ath-m.4.tis   PCNA2   proliferating cell nuclear antigen 2 
 ath-m.4.str   PCNA2   proliferating cell nuclear antigen 2 
 ath-m.4.hor   PCNA2   proliferating cell nuclear antigen 2 
 ath-m.4.bio   PCNA2   proliferating cell nuclear antigen 2 
 ath-m.4.lig   PCNA2   proliferating cell nuclear antigen 2 
 ath-e.1   PCNA2   proliferating cell nuclear antigen 2 
 ath-u.4   PCNA1   proliferating cellular nuclear antigen 1 
 gma-u.4   548079   proliferating cell nuclear antigen 
 gma-u.4   100817651   proliferating cell nuclear antigen 
 ppo-u.4   7481501   proliferating cell nuclear antigen 
 ppo-u.4   7478554   proliferating cell nuclear antigen 
 mtr-u.4   25490757   proliferating cell nuclear antigen 
 sly-u.4   pcna   proliferating cell nuclear antigen 
 osa-u.4   4331062   proliferating cell nuclear antigen-like 

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Top 50 coexpressed genes to PCNA2 (ath-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 ath3030   DNA replication  15 41 29.19
 ath3430   Mismatch repair  6 30 9.97
 ath3440   Homologous recombination  5 53 6.66
 ath3420   Nucleotide excision repair  5 54 6.62
 ath240   Pyrimidine metabolism  3 54 3.46

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ath:PCNA2 (proliferating cell nuclear antigen 2) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition specific* Reference

ath-u.4
for
PCNA2
ath-r.6
for
PCNA2
ath-m.9
for
PCNA2
ath-m.4.notissue
for
PCNA2
ath-m.4.tis
for
PCNA2
ath-m.4.str
for
PCNA2
ath-m.4.hor
for
PCNA2
ath-m.4.bio
for
PCNA2
ath-m.4.lig
for
PCNA2
ath-e.1
for
PCNA2
ath-u.4
for
PCNA1
gma-u.4
for
548079
gma-u.4
for
100817651
ppo-u.4
for
7481501
ppo-u.4
for
7478554
mtr-u.4
for
25490757
sly-u.4
for
pcna
osa-u.4
for
4331062
1 PCNA1 proliferating cellular nuclear antigen 1 837249 At1g07370 16.2 13.2
 14.7
 1.7
 5.2
 5.5
 5.2
 4.2
 0.6
 9.2
 16.2
 12.3
 12.3
 6.7
 6.7


2 POLA3 DNA primase POLA3 834193 At5g41880 13.6 10.6
 13.0
 3.7
 3.0
 4.8
 4.1
 4.8
 2.2
 5.0
 15.3
 8.6
 4.7
 4.3
 7.0
 5.8
 6.7
 4.9
3 PRL Minichromosome maintenance (MCM2/3/5) family protein 828153 At4g02060 12.2 10.3
 10.8
 7.5
 2.4
 4.6
 3.9
 3.9
 1.4
 7.3
 16.9
 11.0
7.3
 6.8
5.8
 6.2
 9.7
 11.8
 14.9
 6.1
4 MCM2 minichromosome maintenance (MCM2/3/5) family protein 841056 At1g44900 11.7 9.5
 10.8
 6.7
 3.4
 4.4
 4.0
 5.0
 1.1
 5.1
 15.3
 9.2
5.9
 6.6
5.8
 1.4
 4.0
 6.6
 11.5
 7.0
5 ETG1 E2F target protein 1 (ETG1) 818650 At2g40550 11.2 9.2
 10.2
 8.4
 3.1
 4.0
 2.4
 4.5
 2.2
 7.7
 16.5
 9.8
5.6
 6.6
4.2
 5.1
 6.4
 7.9
3.1
6 HTA8 histone H2A 8 818463 At2g38810 10.8 9.4
 9.2
 3.5
 3.2
 5.7
 2.3
 4.7
 1.2
 4.6
 9.2
8.4
 6.3
3.8
 4.3
3.8
 4.1
2.3
 2.8
2.6
 5.1
3.6
 5.6
0.8
 6.0
4.4
7 DUT1 DUTP-PYROPHOSPHATASE-LIKE 1 823847 At3g46940 10.5 9.1
 9.1
 4.5
 4.6
 4.2
 5.4
 4.4
 1.4
 5.6
 16.7
 11.0
9.5
 7.4
6.1
 3.1
 4.4
 10.9
 12.2
8.7
 4.0
8 MSI2 Transducin family protein / WD-40 repeat family protein 816179 At2g16780 10.4 9.8
 8.2
 14.9
 3.8
 3.6
 2.4
 4.4
 3.5
 5.9
 8.4
2.6
 5.2
4.4
 4.6
4.1
 3.3
2.2
 3.2
2.1
 6.2
0.7
 8.6
5.2
 5.2
3.1
9 RPA70D Replication factor-A protein 1-like protein 836221 At5g61000 10.3 8.2
 9.6
 10.8
 4.7
 3.7
 4.7
 4.5
 1.3
 6.6
 15.4
14.1
 9.8
4.5
 6.4
5.2
 3.2
 6.9
 10.1
 8.9
 5.0
10 RPA70B RPA70-kDa subunit B 830696 At5g08020 10.3 9.0
 8.8
 54.6
 3.0
 3.2
 2.5
 3.7
 1.8
 5.7
 15.4
14.1
 9.8
4.5
 6.4
5.2
 3.2
 6.9
 10.1
 8.9
 5.0
11 MCM5 Minichromosome maintenance (MCM2/3/5) family protein 815415 At2g07690 10.2 8.4
 9.2
 26.1
 2.9
 4.0
 2.6
 4.0
 0.0
 6.2
 13.4
 9.4
5.7
 7.0
6.1
 2.4
2.3
 5.2
4.7
 8.1
 9.1
 5.2
12 POLA2 DNA polymerase alpha 2 843086 At1g67630 10.1 9.9
 7.6
 32.7
 2.3
 3.5
 3.0
 3.8
 2.1
 6.1
 12.1
 7.1
7.1
 5.4
5.0
 2.8
 4.7
 6.4
 8.4
 3.8
13 MCM4 Minichromosome maintenance (MCM2/3/5) family protein 816142 At2g16440 9.9 9.0
 8.1
 32.1
 2.6
 3.5
 2.5
 4.2
 0.5
 6.7
 14.9
 9.1
6.8
 5.5
5.1
 4.3
 9.2
 7.5
 9.3
 4.1
14 BARD1 breast cancer associated RING 1 839329 At1g04020 9.9 8.1
 8.9
 20.8
 3.5
 4.3
 3.9
 4.5
 0.5
 5.9
 14.0
 5.7
1.7
 3.9
1.7
 5.3
 5.5
 7.5
 8.0
-1.1
 3.5
15 MSH7 MUTS homolog 7 822040 At3g24495 9.8 9.3
 7.6
 20.5
 3.6
 3.3
 2.5
 4.4
 0.3
 4.8
 10.2
 4.9
3.5
 4.6
3.9

5.8
 -0.0
 2.8
16 HTA6 histone H2A 6 836109 At5g59870 9.6 7.3
 9.3
 45.5
 4.2
 2.9
 3.7
 3.8
 4.1
 4.2
 11.1
2.5
 5.3
5.1
 5.2
5.1
 3.9
3.7
 6.1
4.8
 6.8
6.1
 6.0
4.9
 5.8
5.0
17 AT3G54750 downstream neighbor of Son 824640 At3g54750 9.5 7.6
 8.8
 24.5
 2.3
 4.8
 2.7
 3.7
 1.2
 3.1
 9.8
 6.1
4.7
 4.7
4.0
 2.6
2.3
 2.5
2.4
 5.1
 3.5
 3.9
18 AT2G44580 zinc ion binding protein 819066 At2g44580 9.5 9.8






5.0
 11.3
 2.3
0.6
 2.4
0.7
 5.0
 2.9
 0.3
 6.1
 3.6
19 AT4G28310 microtubule-associated protein 828946 At4g28310 9.5 8.2
 8.2
 31.1
 2.7
 3.4
 3.7
 4.0
 0.1
 5.8
 14.5
1.5
 6.2
4.9
 5.5
3.8
 3.5
 5.2
 8.1
 8.2
7.4
 5.5
20 ICU2 DNA-directed DNA polymerase 836845 At5g67100 9.5 8.1
 8.2
 11.6
 3.4
 4.4
 2.0
 4.1
 0.6
 5.3
 10.0
 6.6
 5.7
 5.4
 6.7
 6.0
 8.4
 5.7
21 RPA2 replicon protein A2 816985 At2g24490 9.4 6.4
 9.9
 57.8
 3.5
 3.2
 4.5
 4.4
 1.4
 2.7
 12.8
5.7
 6.5
6.3
 6.3
5.9
 3.7
1.1
 4.0
-0.1
 3.5
2.5
 10.1
4.3
 3.2
1.9
22 APC6 anaphase promoting complex 6 844213 At1g78770 9.4 9.9
 6.3
 11.2
 3.6
 4.9
 1.6
 4.0
 0.6
 3.2
 7.0
 3.4
3.0
 2.3
1.6
 1.2
0.0
 1.0
0.7
 3.0
 3.1
 1.5
23 HTA11 histone H2A 11 824621 At3g54560 9.3 7.8
 8.2
 7.4
 5.1
 4.5
 3.2
 4.8
 3.0
 5.5
 9.2
8.4
 6.3
3.8
 4.3
3.8
 4.1
2.3
 2.8
2.6
 5.1
3.6
 5.6
0.8
 6.0
4.4
24 AT5G65360 Histone superfamily protein 836661 At5g65360 9.3 7.4
 8.6
 55.2
 4.4
 2.6
 2.7
 4.0
 0.4
 5.6
 11.4
10.1
 6.4
5.8
 5.6
5.6
 4.3
4.1
 5.8
5.6
 8.1
8.0
 7.7
6.8
 6.3
6.1
25 HMGB6 high-mobility group box 6 832408 At5g23420 9.2 8.1
 7.9
 52.7
 4.1
 3.3
 2.7
 4.7
 1.3
 6.3
 10.0
 9.2
5.2
 6.6
4.9
 5.2
 6.7
 7.7
 7.1
 6.0
26 RNR1 ribonucleotide reductase 1 816715 At2g21790 9.2 7.4
 8.4
 6.0
 4.7
 2.6
 3.6
 5.8
 0.5
 6.6
 9.7
 11.5
11.1
 6.6
6.0
 5.2
4.4
 9.1
5.7
 5.7
5.3
 8.5
8.2
 5.3
2.5
27 EMB2813 DNA primase, large subunit family 843052 At1g67320 9.1 7.0
 8.8
 112.1
 3.4
 3.2
 2.7
 3.6
 0.4
 5.4
 11.0
 5.3
4.7
 5.4
4.3
 5.3
 5.9
 6.5
 7.7
 4.6
28 MCM3 Minichromosome maintenance (MCM2/3/5) family protein 834670 At5g46280 9.1 6.7
 8.9
 8.9
 2.9
 4.2
 3.0
 4.4
 1.7
 1.2
 13.6
 7.8
6.7
 8.3
6.8
 6.2
 7.7
 7.7
 11.6
 5.4
29 CMT3 chromomethylase 3 843313 At1g69770 8.9 8.1
 7.3
 13.7
 3.3
 5.0
 2.6
 4.0
 0.1
 2.9
 7.7
-0.2
 5.6
3.9
 5.5
4.3
 5.2
-1.1
 4.8
-1.1
 6.5
5.1
 5.7
4.0
 5.7
30 TSK tetratricopeptide repeat (TPR)-containing protein 821404 At3g18730 8.9 9.5






4.8
 9.9
 5.9
4.0
 6.0
4.5

3.6
 5.8
 2.1
1.5
31 ORC1B origin of replication complex 1B 826875 At4g12620 8.7 9.4






4.1
 8.9
 7.6
4.0
 5.8
4.2
 4.0
 4.7
 5.0
 1.0
 3.0
32 AT3G02820 zinc knuckle (CCHC-type) family protein 821018 At3g02820 8.6 8.2
 6.8
 24.0
 2.2
 3.6
 3.2
 3.8
 1.0
 5.8
 8.7
 5.9
4.2
 4.7
3.8
 6.7
 5.1
 4.9
 6.9
 3.2
33 AT5G10390 Histone superfamily protein 830903 At5g10390 8.6 6.7
 8.1
 78.6
 3.8
 2.9
 4.3
 2.8
 4.0
 4.8
 11.4
10.1
 6.4
5.8
 5.6
5.6
 4.3
4.1
 5.8
5.6
 8.1
8.0
 7.7
6.8
 6.3
6.1
34 MCM6 minichromosome maintenance (MCM2/3/5) family protein 834492 At5g44635 8.5 8.8






7.7
 12.8
 8.2
6.8
 6.7
5.9
 4.1
 7.8
 8.6
 9.8
 5.2
35 AT5G54970 uncharacterized protein 835588 At5g54970 8.5 7.2
 7.5
 1.7
 3.1
 4.4
 3.3
 5.2
 2.7
 5.0
 10.5
9.4
 6.3
6.0
 5.9
4.6
 5.4
 5.9
 5.6

36 AT3G52630 Nucleic acid-binding, OB-fold-like protein 824429 At3g52630 8.5 8.7






5.8
 12.6
1.1
 7.5
6.9
 5.0
4.9
 4.3
3.7
 3.6
3.0
 6.0
2.6
 8.2
7.7
 3.1
37 AT3G14740 RING/FYVE/PHD zinc finger superfamily protein 820702 At3g14740 8.3 7.6
 6.8
 66.8
 3.6
 2.8
 3.1
 3.8
 1.1
 4.6
 10.6
 6.1
5.9
 5.9
5.6
 2.9
 4.6
 6.6
 8.4
 2.9
38 SLD5 DNA replication protein-like protein 834960 At5g49010 8.3 6.2
 8.1
 20.6
 2.0
 4.1
 1.7
 4.5
 0.5
 3.0
 8.1
 5.1
 3.6
 3.8
 3.3
 4.1
 -1.5
 1.5
39 RECQI1 RECQ helicase l1 819743 At3g05740 8.3 8.1
 6.2
 129.0
 1.9
 3.3
 1.6
 2.8
 -1.4
 4.2
 10.6
 1.7
 2.0

3.0
 7.6
40 AT1G09200 Histone superfamily protein 837440 At1g09200 8.2 6.6
 7.7
 36.6
 4.4
 3.2
 3.7
 4.0
 1.3
 4.9
 11.4
10.1
 6.4
5.8
 5.6
5.6
 4.3
4.1
 5.8
5.6
 8.1
8.0
 7.7
6.8
 6.3
6.1
41 CDC45 cell division cycle 45 822101 At3g25100 8.2 8.4
 5.8
 153.9
 2.3
 2.4
 0.7
 2.5
 0.5
 5.3
 7.1
 6.9
6.1
 7.1
6.1
 4.7
 5.5
 4.3
 6.7
 4.2
3.6
42 SYN3 Rad21/Rec8-like family protein 825124 At3g59550 7.9 8.2
 5.5
 358.8
 1.0
 3.0
 0.0
 0.8
 -0.1
 5.3
 11.0
 5.1
 4.8

4.5
 6.2
 3.4
43 SDG4 SET domain group 4 829210 At4g30860 7.9 8.1
 5.6
 185.0
 0.2
 2.5
 0.7
 2.9
 -0.2
 5.2
 8.0
 3.8
 3.3

3.8
 2.7
 -0.4
44 VIM1 Zinc finger (C3HC4-type RING finger) family protein 842157 At1g57820 7.9 7.1
 6.5
 55.2
 3.1
 2.3
 3.7
 2.8
 1.4
 6.7
 6.2
4.3
 7.5
4.1
 7.2
3.7
 4.2
2.2
 3.5
2.3
 3.2
1.5
 5.1
 3.3
45 MET1 methyltransferase 1 834975 At5g49160 7.7 6.7
 6.7
 52.7
 2.9
 4.0
 2.0
 3.3
 1.6
 4.9
 7.2
 5.5
5.1
 5.8
5.2
 2.8
1.6
 4.4
1.9
 3.7
1.7
 5.6
 5.0
2.2
46 AT5G10400 Histone superfamily protein 830904 At5g10400 7.7 6.1
 7.2
 204.7
 4.8
 2.7
 3.7
 3.5
 1.3
 0.7
 11.4
10.1
 6.4
5.8
 5.6
5.6
 4.3
4.1
 5.8
5.6
 8.1
8.0
 7.7
6.8
 6.3
6.1
47 CHR1 chromatin remodeling 1 836808 At5g66750 7.7 7.3
 5.9
 51.0
 1.9
 2.6
 2.5
 3.6
 3.0
 4.7
 7.6
 8.3
5.3
 6.5
4.6
 4.3
3.3
 4.0
3.1
 2.2
 5.1
4.8
 2.5
1.6
48 TSO2 Ferritin/ribonucleotide reductase-like family protein 822324 At3g27060 7.5 6.0
 7.0
 75.5
 2.5
 2.0
 2.5
 3.9
 -0.8
 5.5
 10.4
 6.2
5.1
 6.3
4.6
 5.1
3.8
 6.0
4.6
 7.7
6.0
 8.2
 5.4
4.9
49 AT4G26960 uncharacterized protein 828803 At4g26960 7.3 7.6






3.9
 10.5
9.4
 6.3
6.0
 5.9
4.6
 5.4
 5.9
 5.6

50 DEL1 DP-E2F-like 1 823971 At3g48160 7.3 7.7






3.0
 7.8
3.7
 3.8
3.6
 5.1
3.9
 3.8
 4.8
 6.0
 4.4
2.3
 3.1
3.0
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