Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.4   AT1G01980   FAD-binding Berberine family protein 
 ath-r.6   AT1G01980   FAD-binding Berberine family protein 
 ath-m.9   AT1G01980   FAD-binding Berberine family protein 
 ath-m.4.notissue   AT1G01980   FAD-binding Berberine family protein 
 ath-m.4.tis   AT1G01980   FAD-binding Berberine family protein 
 ath-m.4.str   AT1G01980   FAD-binding Berberine family protein 
 ath-m.4.hor   AT1G01980   FAD-binding Berberine family protein 
 ath-m.4.bio   AT1G01980   FAD-binding Berberine family protein 
 ath-m.4.lig   AT1G01980   FAD-binding Berberine family protein 
 ath-e.1   AT1G01980   FAD-binding Berberine family protein 
 gma-u.4   100796276   berberine bridge enzyme-like 8 
 ppo-u.4   7480406   berberine bridge enzyme-like 15 
 mtr-u.4   11420001   berberine bridge enzyme-like 21 
 sly-u.4   101264701   berberine bridge enzyme-like 22 
 sly-u.4   101246398   berberine bridge enzyme-like 22 
 osa-u.4   4341253   berberine bridge enzyme-like 8 
 osa-u.4   4341259   berberine bridge enzyme-like 28 

close


Top 50 coexpressed genes to AT1G01980 (ath-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 ath40   Pentose and glucuronate interconversions  6 80 7.30
 ath500   Starch and sucrose metabolism  3 145 2.23
 ath52   Galactose metabolism  1 57 -
 ath4626   Plant-pathogen interaction  2 204 -
 ath4075   Plant hormone signal transduction  2 291 -

close


ath:AT1G01980 (FAD-binding Berberine family protein) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition specific* Reference

ath-u.4
for
AT1G01980
ath-r.6
for
AT1G01980
ath-m.9
for
AT1G01980
ath-m.4.notissue
for
AT1G01980
ath-m.4.tis
for
AT1G01980
ath-m.4.str
for
AT1G01980
ath-m.4.hor
for
AT1G01980
ath-m.4.bio
for
AT1G01980
ath-m.4.lig
for
AT1G01980
ath-e.1
for
AT1G01980
gma-u.4
for
100796276
ppo-u.4
for
7480406
mtr-u.4
for
11420001
sly-u.4
for
101264701
sly-u.4
for
101246398
osa-u.4
for
4341253
osa-u.4
for
4341259
1 AT3G62710 Glycosyl hydrolase family protein 825445 At3g62710 9.4 7.7
 8.6
 17.3
 3.6
 3.1
 1.8
 2.1
 1.4
 4.3






2 RALFL26 ralf-like 26 822109 At3g25170 9.3 8.0
 8.0
 1235.0
 4.1
 0.4
 0.6
 1.2
 1.4
 1.1






3 AT3G01240 splicing regulatory glutamine/lysine-rich-like protein 821219 At3g01240 9.0 5.6
 10.0
 39.2
 2.9
 1.3
 2.0
 1.1
 1.4
 4.1






4 RALFL25 ralf-like 25 822108 At3g25165 8.9 6.8
 8.5
 2121.8
 3.7
 0.9
 0.8
 0.4
 0.4
 1.4






5 AT3G20220 SAUR-like auxin-responsive protein family 821566 At3g20220 8.8 5.8
 9.4
 573.5
 3.4
 1.4
 0.8
 1.3
 1.4
 1.3




1.2
1.1
 0.4
0.3
6 EXL6 EXORDIUM like 6 821168 At3g02970 8.8 5.3
 9.8
 1041.4
 4.6
 1.2
 -0.1
 1.8
 1.8
 2.8






7 sks14 SKU5 similar 14 842005 At1g55560 8.8 5.7
 9.4
 11.4
 3.0
 3.8
 1.8
 0.1
 1.8
 1.5
 0.1
-0.2

0.1
-0.1
 -0.4
-0.9
 0.1
 -0.1
8 AT2G23900 Pectin lyase-like superfamily protein 816922 At2g23900 8.7 6.0
 9.1
 304.8
 3.9
 1.6
 0.7
 0.8
 1.7
 1.9
 0.7
0.3
 0.1
-0.0
 -0.4
-0.5
 -0.6
-0.7
 0.0
-0.3
 0.7
-0.3
 -0.4
-0.4
9 AT5G48140 Pectin lyase-like superfamily protein 834866 At5g48140 8.7 5.6
 9.4
 1420.2
 3.2
 0.7
 1.2
 1.5
 1.8
 3.3
 0.2
0.0

0.2
-0.4
 -0.1
-0.4

10 LCR72 low-molecular-weight cysteine-rich 72 814745 At2g02140 8.7 7.6
 7.4
 907.9
 3.4
 2.0
 0.9
 0.3
 0.7
 1.5




-0.9
 -0.8
11 AT5G12000 kinase with adenine nucleotide alpha hydrolases-like domain-containing protein 831073 At5g12000 8.6 6.0
 8.9
 3538.1
 3.3
 0.3
 -0.0
 1.9
 1.2
 1.7


-0.6
-1.1
 0.3
-0.5
 -1.1
 0.5
12 AT5G39880 uncharacterized protein 833985 At5g39880 8.6 5.9
 9.0
 681.0
 3.2
 0.4
 0.2
 0.6
 1.5
 3.9






13 ANX2 Malectin/receptor-like protein kinase family protein 832975 At5g28680 8.5 6.8
 7.9
 325.2
 3.5
 2.0
 0.5
 2.7
 1.8
 3.5
 0.3
-0.2
 0.3
-0.1
 0.0
-0.0
 0.3
 -0.9
14 AT4G02250 Plant invertase/pectin methylesterase inhibitor superfamily protein 827589 At4g02250 8.5 7.4
 7.3
 1790.6
 3.0
 0.3
 0.7
 1.4
 1.0
 4.7
 -1.1





15 AT1G76370 Protein kinase superfamily protein 843969 At1g76370 8.4 5.6
 8.9
 1364.4
 3.7
 1.5
 1.0
 1.5
 0.5
 1.0
 2.0
 1.0
 1.4
 0.1
-0.6
 0.5
-1.0

16 AT3G26860 Plant self-incompatibility protein S1 family 822302 At3g26860 8.4 7.1
 7.3
3.4
 1.0
 1.5
 0.2
 1.3
 2.4






17 EXO70H3 exocyst subunit exo70 family protein H3 820110 At3g09530 8.4 4.1
 10.4
 2072.1
 3.2
 1.2
 1.0
 1.0
 2.8
 1.3






18 CPK24 calcium-dependent protein kinase 24 817708 At2g31500 8.3 4.3
 10.1
 966.6
 3.9
 1.1
 0.7
 1.6
 2.2
 1.1






19 VGDH2 VANGUARD-like protein 825390 At3g62170 8.3 5.8
 8.6
 42.1
 2.7
 1.8
 2.3
 1.8
 0.9
 2.7
 0.9
0.3
1.0
 0.1
-0.5
 -0.3
-0.7
 0.3
-0.8
 0.1
-0.0
20 AT5G15110 Pectate lyase family protein 831363 At5g15110 8.3 6.5
 7.9
 74.5
 3.3
 3.1
 2.3
 1.4
 2.6
 2.3
 0.8
-0.1

0.1
-0.1
 -0.1
-0.6
 0.5
-0.2
 0.4
-0.4
21 AT5G50830 nuclear polyadenylated RNA-binding protein 835155 At5g50830 8.2 3.5
 10.8
 422.5
 3.8
 1.0
 1.6
 1.0
 3.7
 3.4






22 AT5G07430 Pectin lyase-like superfamily protein 830634 At5g07430 8.2 4.1
 10.0
 19.4
 2.9
 2.9
 1.8
 1.0
 2.8
 3.6


-0.1
-0.3
 0.4
-0.4

23 PERK7 Protein kinase superfamily protein 841351 At1g49270 8.1 6.8
 7.2
 237.3
 2.7
 2.3
 1.2
 2.0
 2.0
 2.8
 0.9
0.4
 0.7
0.1
 1.4
0.6
 0.0
-0.3
 1.2
1.2
 1.1
0.5
 0.4
0.4
24 AT1G35490 bZIP family transcription factor 840442 At1g35490 8.1 6.2
 7.8
 2339.3
 3.1
 -0.5
 1.4
 -0.4
 -0.6
 2.5
 0.8
0.1
 1.5
-0.3
 -0.6
 -0.2
-0.3
 -0.0
-0.1
 -0.3
-0.8
 -0.1
-0.2
25 DAF1 F-box family protein 825396 At3g62230 8.1 6.4
 7.6
 1536.3
 3.0
 0.7
 0.5
 1.0
 1.6
 4.6






26 APPB1 Plant invertase/pectin methylesterase inhibitor superfamily protein 828566 At4g24640 8.0 6.0
 7.8
 2762.9
 3.8
 0.7
 0.2
 1.2
 0.9
 2.7






27 CWINV2 cell wall invertase 2 824426 At3g52600 8.0 5.7
 8.1
 1173.4
 3.5
 1.8
 0.8
 1.3
 0.3
 1.7
 1.0
-0.3
 -1.4
2.0
0.2
 1.8
1.0
 0.5
-0.9
 1.4
-0.1
28 scpl38 serine carboxypeptidase-like 38 815137 At2g05850 7.8 7.0
 6.5
 1222.7
 5.2
 2.1
 0.7
 0.7
 1.5
 3.9






29 AT5G20390 Glycosyl hydrolase superfamily protein 832161 At5g20390 7.8 7.7
 5.7
 2557.1
 3.9
 0.3
 0.2
 1.2
 1.3
 3.6




-0.4
 0.5
30 AT3G05610 Plant invertase/pectin methylesterase inhibitor superfamily 819727 At3g05610 7.8 6.2
 7.2
 1612.7
 3.6
 1.2
 0.5
 -0.4
 1.6
 2.2
 1.1
0.5

-0.1
-0.5
 1.1
0.1
 -0.1
 -0.4
31 AT3G43120 SAUR-like auxin-responsive protein family 823371 At3g43120 7.7 5.9
 7.5
 520.0
 3.2
 2.5
 1.0
 1.7
 2.1
 2.0
 1.4
 -1.1
 -0.6
 0.7
-0.1
 -0.6
-0.6
 0.7
 0.0
32 AT1G30710 FAD-binding Berberine family protein 839951 At1g30710 7.7 4.1
 9.2
 918.3
 3.7
 0.3
 2.8
 2.0
 1.7
 1.0
 2.3
1.9
 1.5
1.3
 9.4
1.4
 1.6
0.5
 3.7
2.4
 2.5
0.2
 3.2
0.1
33 AT1G66210 Subtilisin-like serine endopeptidase family protein 842936 At1g66210 7.7 6.5
 6.8
 700.0
 4.9
 1.1
 1.1
 1.7
 1.3
 3.5






34 AT2G26850 F-box family protein 817226 At2g26850 7.7 7.4
 5.9
 2413.7
 3.6
 0.4
 1.3
 1.0
 0.7
 3.2
 0.7
0.2
 0.4
0.4
 1.5
0.2
 0.3
-0.4
 -0.2
-0.4
 -0.3
 -0.5
35 AT3G07820 Pectin lyase-like superfamily protein 819973 At3g07820 7.6 5.3
 7.8
 283.0
 2.8
 0.9
 1.0
 0.4
 1.3
 4.1
 0.2
0.0

0.2
-0.4
 -0.1
-0.4

36 AT5G26060 Plant self-incompatibility protein S1 family 832675 At5g26060 7.5 5.1
 7.9
 1241.2
 2.7
 1.5
 1.0
 0.3
 1.3
 1.4






37 PERK6 Protein kinase superfamily protein 821414 At3g18810 7.4 5.8
 7.0
 1134.0
 2.9
 1.2
 1.1
 1.6
 2.2
 2.2
 0.9
0.4
 0.7
0.1
 1.4
0.6
 0.0
-0.3
 1.2
1.2
 1.1
0.5
 0.4
0.4
38 AT3G62180 Plant invertase/pectin methylesterase inhibitor superfamily protein 825391 At3g62180 7.3 6.7
 5.9
 489.6
 3.0
 1.4
 0.9
 2.3
 1.2
 3.1






39 AT3G05725 hypothetical protein (DUF3511) 2745870 At3g05725 7.3 7.5






2.9






40 AT59 Pectate lyase family protein 838004 At1g14420 7.3 3.8
 8.8
 641.4
 4.4
 1.5
 0.7
 0.6
 0.8
 0.8
 0.8
-0.1

0.1
-0.1
 -0.1
-0.6
 0.5
-0.2
 0.4
-0.4
41 AT1G29140 Pollen Ole e 1 allergen and extensin family protein 839788 At1g29140 7.2 3.5
 8.9
 261.2
 2.7
 1.3
 1.6
 1.8
 1.8
 1.6
 -0.8

0.1
-0.3
 -0.5
-0.5

42 GH9A4 glycosyl hydrolase 9A4 823499 At3g43860 7.1 5.7
 6.6
 1174.4
 4.0
 0.8
 0.2
 1.2
 2.2
 2.0


-0.7
 -0.9

43 AT1G03050 ENTH/ANTH/VHS superfamily protein 839416 At1g03050 7.1 1.5
 10.8
 1099.0
 3.2
 0.9
 2.2
 0.6
 1.4
 0.7


-0.5
-0.6
 0.3
-0.7

44 AT5G61720 hypothetical protein (DUF1216) 836294 At5g61720 7.1 4.9
 7.4
 170.9
 2.7
 1.9
 0.1
 1.9
 3.3
 1.6






45 PGA4 polygalacturonase 4 839391 At1g02790 7.1 5.3
 7.0
 240.9
 2.7
 0.3
 0.7
 1.0
 1.3
 4.4
 0.3
-0.1
-0.4
 0.0
-1.1
 -0.6
-1.1

46 AT1G75870 uncharacterized protein 843920 At1g75870 7.0 5.8
 6.4
 2061.0
 3.2
 0.8
 0.6
 2.2
 1.9
 2.4






47 AT4G03290 EF hand calcium-binding protein family 827993 At4g03290 7.0 3.8
 8.3
 1499.7
 3.9
 1.3
 1.3
 -0.7
 1.2
 3.1
 0.4
-0.0
 0.7
0.3
 2.1
1.9
 0.9
0.3
 -0.0
-0.7
 -0.4
-1.2
 -0.1
-0.2
48 GH9B11 glycosyl hydrolase 9B11 819064 At2g44560 6.9 6.3
 5.7
 2226.0
 3.1
 0.8
 1.1
 0.2
 0.3
 2.6






49 AT5G62750 uncharacterized protein 836396 At5g62750 6.9 4.5
 7.5
 2099.5
 3.2
 0.0
 0.9
 -0.7
 1.8
 2.0






50 SVL5 SHV3-like 5 835929 At5g58170 6.9 3.1
 8.7
 970.5
 4.4
 1.5
 0.4
 2.3
 1.8
 1.3
 -0.4

-0.7
-1.1
 -0.0
-0.3

The preparation time of this page was 0.6 [sec].