cis; AAACGTG


Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
GTACGTGTTATAAAACGTGT WARBNEXTA [ref]
             AACGTG  T/GBOXATPIN2 [ref]
              ACGTG  ABRELATERD1 [ref]
              ACGT   ACGTATERD1 [ref]

CEG profile for position preference


CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of AAACGTG

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GO IDterm-Log(p)number of
{A; genes in a GO}
numver of
{B; genes with this heptamer}
{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of AAACGTG.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.60At1g32640basic helix-loop-helix (bHLH) protein (RAP-1) ((ATMYC2)) BHLH
0.56At2g46510basic helix-loop-helix (bHLH) family protein BHLH
0.55At4g17230scarecrow-like transcription factor 13 (SCL13) GRAS
0.54At1g43160AP2 domain-containing protein RAP2.6 (RAP2.6) AP2-EREBP
0.53At5g67300myb family transcription factor MYB
0.51At5g17490gibberellin response modulator, putative / gibberellin-responsive modulator, putative ((RGL3)) GRAS
0.50At4g05100myb family transcription factor (MYB74) MYB
0.50At4g27410no apical meristem (NAM) family protein (RD26) ((RD26)) NAC
0.48At3g15210ethylene-responsive element-binding factor 4 (ERF4) ((ATERF4, RAP2.5)) AP2-EREBP
0.47At2g38250DNA-binding protein-related Trihelix
0.47At1g28370ERF domain protein 11 (ERF11) AP2-EREBP
0.47At3g52800zinc finger (AN1-like) family protein C2H2
0.46At1g22810AP2 domain-containing transcription factor, putative AP2-EREBP
0.46At1g18710myb family transcription factor (MYB47) MYB
0.46At1g19310zinc finger (C3HC4-type RING finger) family protein C3H

link to other 304 cis elements in ATTED

similar seq.
AAACGTG
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; CACGTTT
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
AAACGTG1.000.0795
AACGTGT0.700.0790
ACACGTT0.690.0633
TCTATAA0.650.074
TAAATAG0.640.072
CTATAAA0.630.1063
CACACGT0.630.0670
ATAAATA0.620.0917
TATAAAT0.600.1018