cis; GGATAAG


Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
 GATAAG IBOX [ref] [ref] [ref]
GGATA   MYBST1 [ref]
 GATAA  IBOXCORE
 GATA   GATABOX [ref] [ref] [ref] [ref] [ref]

CEG profile for position preference


CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of GGATAAG

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GO IDterm-Log(p)number of
{A; genes in a GO}
numver of
{B; genes with this heptamer}
{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of GGATAAG.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.59At2g18300basic helix-loop-helix (bHLH) family protein BHLH
0.58At4g14540CCAAT-box binding transcription factor subunit B (NF-YB) (HAP3 ) (AHAP3) family CCAAT-HAP3
0.57At1g68520zinc finger (B-box type) family protein C2C2-CO-like
0.54At5g63780zinc finger (C3HC4-type RING finger) family protein C3H
0.53At5g63470CCAAT-box binding transcription factor Hap5a, putative CCAAT-HAP5
0.53At4g36540basic helix-loop-helix (bHLH) family protein BHLH
0.52At2g26580plant-specific transcription factor YABBY family protein C2C2-YABBY
0.51At1g68190zinc finger (B-box type) family protein C2C2-CO-like
-0.50At2g46270G-box binding factor 3 (GBF3) ((GBF3)) bZIP
0.49At2g02070zinc finger (C2H2 type) family protein C2H2
0.47At3g46130myb family transcription factor (MYB48) ((MYB111)) MYB
0.47At2g02450no apical meristem (NAM) family protein NAC
0.47At5g61590AP2 domain-containing transcription factor family protein AP2-EREBP
0.46At5g07580ethylene-responsive element-binding family protein AP2-EREBP
0.46At3g50700zinc finger (C2H2 type) family protein C2H2

link to other 304 cis elements in ATTED

similar seq.
GGATAAG
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; CTTATCC
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
GGATAAG1.000.0689
CTTATCC0.920.1153
TTATCCA0.920.1054
CTTATCT0.910.0821
GATAAGA0.900.0742
TCTTATC0.890.0923
ATCTTAT0.880.0723
GATAAGG0.880.0739
TATCCAC0.880.0753
AGATAAG0.870.0838