cis; TGGATAA


Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
 GGATA  MYBST1 [ref]
  GATAA IBOXCORE
  GATA  GATABOX [ref] [ref] [ref] [ref] [ref]

CEG profile for position preference


CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of TGGATAA

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GO IDterm-Log(p)number of
{A; genes in a GO}
numver of
{B; genes with this heptamer}
{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of TGGATAA.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.62At4g14540CCAAT-box binding transcription factor subunit B (NF-YB) (HAP3 ) (AHAP3) family CCAAT-HAP3
0.59At1g12860basic helix-loop-helix (bHLH) family protein / F-box family protein BHLH
0.55At4g36540basic helix-loop-helix (bHLH) family protein BHLH
0.55At5g63470CCAAT-box binding transcription factor Hap5a, putative CCAAT-HAP5
0.54At2g02070zinc finger (C2H2 type) family protein C2H2
0.53At1g68190zinc finger (B-box type) family protein C2C2-CO-like
0.53At4g01460basic helix-loop-helix (bHLH) family protein BHLH
0.53At5g63780zinc finger (C3HC4-type RING finger) family protein C3H
0.53At1g68520zinc finger (B-box type) family protein C2C2-CO-like
-0.52At4g36990heat shock factor protein 4 (HSF4) / heat shock transcription factor 4 (HSTF4) ((AT-HSFB1, ATHSF4, HSF4)) HSF
0.51At2g18300basic helix-loop-helix (bHLH) family protein BHLH
0.50At1g26150protein kinase family protein Trihelix
0.49At5g08330TCP family transcription factor, putative TCP
0.49At2g26580plant-specific transcription factor YABBY family protein C2C2-YABBY
0.49At1g22590MADS-box family protein MADS

link to other 304 cis elements in ATTED

similar seq.
TGGATAA
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; TTATCCA
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
TGGATAA1.000.0712
CCTTATC0.950.1017
TATCCAC0.910.0753
GATAAGG0.900.0739
AGATAAG0.890.0838
CTTATCC0.870.1153
CTTATCT0.870.0821
TCTTATC0.850.0923
ATCTTAT0.850.0723
AAGATAA0.850.0641