ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	NUC-L2	nucleolin like 2
ath-u.5	NUC-L2	nucleolin like 2
ath-r.7	NUC-L2	nucleolin like 2
ath-e.2	NUC-L2	nucleolin like 2
ath-m.4.bio	NUC-L2	nucleolin like 2
ath-m.4.hor	NUC-L2	nucleolin like 2
ath-m.4.lig	NUC-L2	nucleolin like 2
ath-m.4.str	NUC-L2	nucleolin like 2
ath-m.4.tis	NUC-L2	nucleolin like 2
ath-u.5	NUC-L1	nucleolin like 1
bra-r.6	103871689	nucleolin 1
bra-r.6	103868665	nucleolin 1
bra-r.6	103869544	nucleolin 2
bna-r.1	106382078	nucleolin 1
bna-r.1	106381055	nucleolin 1-like
bna-r.1	125575007	nucleolin 1-like
ghi-r.1	107946108	nucleolin 2
ghi-r.1	107928939	nucleolin 1
ghi-r.1	107894037	nucleolin 1
cit-r.1	102610503	nucleolin 2
gma-u.5	100779929	nucleolin 1
gma-u.5	100786132	nucleolin 1
vvi-u.5	100262769	nucleolin 2
vvi-u.5	104879270	nucleolin 2-like
ppo-u.5	18101017	nucleolin 2
ppo-u.5	7486382	nucleolin 1
mtr-u.5	11446619	nucleolin 1
sly-u.5	544064	nucleolin-like
sot-r.1	102599812	nucleolin 1
nta-r.1	107762714	nucleolin 1-like
nta-r.1	107776783	uncharacterized LOC107776783
osa-u.5	4337032	nucleolin 2-like
osa-u.5	4344865	nucleolin 1-like
zma-u.5	100194303	uncharacterized LOC100194303
tae-r.2	123054607	nucleolin 2
tae-r.2	123120521	nucleolin 2
tae-r.2	123154406	nucleolin 1
hvu-r.1	123427797	nucleolin 2-like
hvu-r.1	123411480	nucleolin 1
sbi-r.1	8067716	nucleolin 2
sbi-r.1	8085015	nucleolin 2
bdi-r.1	100836665	nucleolin 1
bdi-r.1	100838448	nucleolin 2
cre-r.1	CHLRE_06g275100v5	uncharacterized protein

Top 50 coexpressed genes to NUC-L2 (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to NUC-L2 (ath-m.9 coexpression data)

CoexMap"821392"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0000183 [list] [network] rDNA heterochromatin formation

(2 genes)

IGI

GO CC

GO:0005730 [list] [network] nucleolus	(394 genes)	IDA
GO:0005634 [list] [network] nucleus	(10367 genes)	ISM

GO MF

GO:0031491 [list] [network] nucleosome binding	(7 genes)	IDA
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_001325663.1 [sequence] [blastp]
NP_001325664.1 [sequence] [blastp]
NP_188491.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9	(predict for NP_001325663.1)
nucl 9	(predict for NP_001325664.1)
nucl 9, cyto 1, plas 1, cyto_plas 1	(predict for NP_188491.1)

Subcellular
localization
TargetP

other 8	(predict for NP_001325663.1)
other 8	(predict for NP_001325664.1)
other 8	(predict for NP_188491.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for NUC-L2	ath-u.5 for NUC-L2	ath-r.7 for NUC-L2	ath-e.2 for NUC-L2	ath-m.4.bio for NUC-L2	ath-m.4.hor for NUC-L2	ath-m.4.lig for NUC-L2	ath-m.4.str for NUC-L2	ath-m.4.tis for NUC-L2	ath-u.5 for NUC-L1	bra-r.6 for 103871689	bra-r.6 for 103868665	bra-r.6 for 103869544	bna-r.1 for 106382078	bna-r.1 for 106381055	bna-r.1 for 125575007	ghi-r.1 for 107946108	ghi-r.1 for 107928939	ghi-r.1 for 107894037	cit-r.1 for 102610503	gma-u.5 for 100779929	gma-u.5 for 100786132	vvi-u.5 for 100262769	vvi-u.5 for 104879270	ppo-u.5 for 18101017	ppo-u.5 for 7486382	mtr-u.5 for 11446619	sly-u.5 for 544064	sot-r.1 for 102599812	nta-r.1 for 107762714	nta-r.1 for 107776783	osa-u.5 for 4337032	osa-u.5 for 4344865	zma-u.5 for 100194303	tae-r.2 for 123054607	tae-r.2 for 123120521	tae-r.2 for 123154406	hvu-r.1 for 123427797	hvu-r.1 for 123411480	sbi-r.1 for 8067716	sbi-r.1 for 8085015	bdi-r.1 for 100836665	bdi-r.1 for 100838448	cre-r.1 for CHLRE_06g275100v5

Ortholog

Ortholog ID: 3223

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

NUC-L2

NUC-L1

Function^*

nucleolin like 2

nucleolin like 1

nucleolin 1

nucleolin 2

nucleolin 1

nucleolin 1-like

nucleolin 1

nucleolin 2

nucleolin 1

nucleolin 2

nucleolin 1

nucleolin 2

nucleolin 1

nucleolin-like

nucleolin 1

nucleolin 1-like

uncharacterized LOC107776783

nucleolin 2-like

nucleolin 1-like

uncharacterized LOC100194303

nucleolin 2

nucleolin 2-like

nucleolin 1

nucleolin 2

nucleolin 1

nucleolin 2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	3
ath03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	4
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	10
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	8
gma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	9
ppo03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	2
nta03008	Ribosome biogenesis in eukaryotes	2
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	6
zma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00970	Aminoacyl-tRNA biosynthesis	3
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00940	Phenylpropanoid biosynthesis	3
tae04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	5
hvu00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	6
hvu03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	4
sbi00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	2
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	6

Expression

Expression pattern

Entrez Gene ID^*

821392

841314

103871689

103869544

103833240

125596200

111202893

106412081

107894037

107920425

107900963

102610503

100779929

100786132

100262769

18101017

7486382

11446619

544064

102599812

107762714

107776783

4337032

4344865

100194303

123054607

123120521

123046749

123427797

123411480

8067716

8085015

100836665

100838448

66053667

The preparation time of this page was 0.2 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	10	3	3	3	1	2	2	2	1	1	1	2	2	1	3	2	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to NUC-L2 (ath-m.9 coexpression data)

Top 50 enrichment test to NUC-L2 (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**