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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   100280239   ATP-dependent DNA helicase Q-like 
 zma-r.6   100280239   ATP-dependent DNA helicase Q-like 
 zma-m.5   100280239   ATP-dependent DNA helicase Q-like 
 osa-u.5   4330923   ATP-dependent DNA helicase Q-like 3 
 ath-u.5   RecQl3   DEAD/DEAH box RNA helicase family protein 
 gma-u.5   100819601   ATP-dependent DNA helicase Q-like 3 
 sly-u.5   101250424   ATP-dependent DNA helicase Q-like 3 
 vvi-u.5   100242171   ATP-dependent DNA helicase Q-like 3 
 ppo-u.5   18099126   ATP-dependent DNA helicase Q-like 3 
 mtr-u.5   11446659   ATP-dependent DNA helicase Q-like 3 

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Top 50 coexpressed genes to 100280239 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100280239 (zma-u.5 coexpression data)

CoexMap"100280239"


zmaLOC100280239 | Entrez gene ID : 100280239    
Species zma osa ath gma sly vvi ppo mtr sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma03440 [list] [network] Homologous recombination (61 genes)
zma03460 [list] [network] Fanconi anemia pathway (52 genes)
GO BP
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (84 genes)  IEA  
GO CC
GO:0005694 [list] [network] chromosome  (441 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (5465 genes)  IEA  
GO MF
GO:0009378 [list] [network] four-way junction helicase activity  (8 genes)  IEA  
GO:0043138 [list] [network] 3'-5' DNA helicase activity  (16 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2473 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (4170 genes)  IEA  
Protein NP_001146640.2 [sequence] [blastp]
XP_020408880.1 [sequence] [blastp]
XP_020408881.1 [sequence] [blastp]
XP_020408882.1 [sequence] [blastp]
XP_020408883.1 [sequence] [blastp]
XP_020408884.1 [sequence] [blastp]
XP_020408885.1 [sequence] [blastp]
XP_020408886.1 [sequence] [blastp]
XP_020408887.1 [sequence] [blastp]
XP_020408889.1 [sequence] [blastp]
XP_020408890.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  E.R. 2,  cyto 1  (predict for NP_001146640.2)
nucl 6,  cyto 2,  E.R. 1  (predict for XP_020408880.1)
nucl 6,  cyto 2,  E.R. 1  (predict for XP_020408881.1)
nucl 6,  cyto 2,  E.R. 1  (predict for XP_020408882.1)
nucl 6,  cyto 2,  E.R. 1  (predict for XP_020408883.1)
nucl 6,  cyto 2,  E.R. 1  (predict for XP_020408884.1)
nucl 6,  cyto 2,  E.R. 1  (predict for XP_020408885.1)
nucl 6,  cyto 2,  E.R. 1  (predict for XP_020408886.1)
nucl 6,  cyto 2,  E.R. 1  (predict for XP_020408887.1)
nucl 6,  E.R. 2,  cyto 1  (predict for XP_020408889.1)
nucl 6,  E.R. 2,  cyto 1  (predict for XP_020408890.1)
Subcellular
localization
TargetP
other 8,  mito 3  (predict for NP_001146640.2)
other 8,  mito 3  (predict for XP_020408880.1)
other 8,  mito 3  (predict for XP_020408881.1)
other 8,  mito 3  (predict for XP_020408882.1)
other 8,  mito 3  (predict for XP_020408883.1)
other 8,  mito 3  (predict for XP_020408884.1)
other 8,  mito 3  (predict for XP_020408885.1)
other 8,  mito 3  (predict for XP_020408886.1)
other 8,  mito 3  (predict for XP_020408887.1)
other 8,  mito 3  (predict for XP_020408889.1)
other 8,  mito 3  (predict for XP_020408890.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
100280239

.
zma-r.6
for
100280239

.
zma-m.5
for
100280239

.
osa-u.5
for
4330923

.
ath-u.5
for
RecQl3

.
gma-u.5
for
100819601

.
sly-u.5
for
101250424

.
vvi-u.5
for
100242171

.
ppo-u.5
for
18099126

.
mtr-u.5
for
11446659

.


Ortholog ID: 10898
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol RecQl3 LOC100819601 LOC101250424 LOC4330923 LOC100280239 LOC103834937 LOC100242171 LOC18099126 LOC11446659 LOC123145766 LOC123128632 LOC123406204 LOC107912858 LOC107895547 LOC106436624 LOC106361284 CHLRE_16g673393v5 LOC8082689 LOC102581697 LOC102620027 LOC100837791 LOC107778829 LOC107759901
Function* DEAD/DEAH box RNA helicase family protein ATP-dependent DNA helicase Q-like 3 ATP-dependent DNA helicase Q-like 3 ATP-dependent DNA helicase Q-like 3 ATP-dependent DNA helicase Q-like ATP-dependent DNA helicase Q-like 3 ATP-dependent DNA helicase Q-like 3 ATP-dependent DNA helicase Q-like 3 ATP-dependent DNA helicase Q-like 3 ATP-dependent DNA helicase Q-like 3 ATP-dependent DNA helicase Q-like 3 ATP-dependent DNA helicase Q-like 3 ATP-dependent DNA helicase Q-like 3 ATP-dependent DNA helicase Q-like 3 ATP-dependent DNA helicase Q-like 3 ATP-dependent DNA helicase Q-like 3 uncharacterized protein ATP-dependent DNA helicase Q-like 3 ATP-dependent DNA helicase Q-like 3 ATP-dependent DNA helicase Q-like 3 ATP-dependent DNA helicase Q-like 3 ATP-dependent DNA helicase Q-like 3 ATP-dependent DNA helicase Q-like 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04814 Motor proteins 2
gma00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03440 Homologous recombination 3
mtr03460 Fanconi anemia pathway 2
mtr04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03440 Homologous recombination 2
tae03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04814 Motor proteins 6
ghi03440 Homologous recombination 4
ghi03460 Fanconi anemia pathway 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 4
ghi03460 Fanconi anemia pathway 2
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 5
nta04130 SNARE interactions in vesicular transport 2
nta03060 Protein export 2
nta04145 Phagosome 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829727 100819601 101250424 4330923 100280239 103834937 100242171 18099126 11446659 123145766 123128632 123406204 107912858 107895547 106436624 106361284 5721377 8082689 102581697 102620027 100837791 107778829 107759901
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