ATTED-II : GeneCoexpression result

Species	Gene	Description
mtr-u.5	11446659	ATP-dependent DNA helicase Q-like 3
mtr-r.5	11446659	ATP-dependent DNA helicase Q-like 3
mtr-m.5	11446659	ATP-dependent DNA helicase Q-like 3
gma-u.5	100819601	ATP-dependent DNA helicase Q-like 3
ppo-u.5	18099126	ATP-dependent DNA helicase Q-like 3
ath-u.5	RecQl3	DEAD/DEAH box RNA helicase family protein
vvi-u.5	100242171	ATP-dependent DNA helicase Q-like 3
sly-u.5	101250424	ATP-dependent DNA helicase Q-like 3
osa-u.5	4330923	ATP-dependent DNA helicase Q-like 3
zma-u.5	100280239	ATP-dependent DNA helicase Q-like

functional annotation

KEGG

mtr03440 [list] [network] Homologous recombination (67 genes)

mtr03460 [list] [network] Fanconi anemia pathway (41 genes)

GO BP

GO:0000724 [list] [network] double-strand break repair via homologous recombination

(67 genes)

IEA

GO CC

GO:0005694 [list] [network] chromosome	(402 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(4514 genes)	IEA

GO MF

GO:0009378 [list] [network] four-way junction helicase activity	(9 genes)	IEA
GO:0043138 [list] [network] 3'-5' DNA helicase activity	(16 genes)	IEA
GO:0005524 [list] [network] ATP binding	(2502 genes)	IEA
GO:0003676 [list] [network] nucleic acid binding	(4267 genes)	IEA

Protein

XP_003595317.2 [sequence] [blastp]
XP_013463564.1 [sequence] [blastp]
XP_024632613.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, cyto 4, vacu 1, pero 1	(predict for XP_003595317.2)
nucl 5, cyto 4, vacu 1, pero 1	(predict for XP_013463564.1)
nucl 5, cyto 5, cyto_nucl 5	(predict for XP_024632613.1)

Subcellular
localization
TargetP

other 8	(predict for XP_003595317.2)
other 8	(predict for XP_013463564.1)
other 8	(predict for XP_024632613.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 11446659	mtr-r.5 for 11446659	mtr-m.5 for 11446659	gma-u.5 for 100819601	ppo-u.5 for 18099126	ath-u.5 for RecQl3	vvi-u.5 for 100242171	sly-u.5 for 101250424	osa-u.5 for 4330923	zma-u.5 for 100280239

Ortholog ID: 10898

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

RecQl3

Function^*

ATP-dependent DNA helicase Q-like 3

DEAD/DEAH box RNA helicase family protein

ATP-dependent DNA helicase Q-like 3

ATP-dependent DNA helicase Q-like

ATP-dependent DNA helicase Q-like 3

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03440	Homologous recombination	3
mtr03460	Fanconi anemia pathway	2
mtr04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04814	Motor proteins	2
gma00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03410	Base excision repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04814	Motor proteins	6
ghi03440	Homologous recombination	4
ghi03460	Fanconi anemia pathway	2
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03440	Homologous recombination	4
ghi03460	Fanconi anemia pathway	2
ghi04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03440	Homologous recombination	2
bna03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03440	Homologous recombination	2
bna03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	5
nta04130	SNARE interactions in vesicular transport	2
nta03060	Protein export	2
nta04145	Phagosome	2
nta03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03440	Homologous recombination	2
nta03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	3
tae03440	Homologous recombination	2
tae03460	Fanconi anemia pathway	2

Expression

Expression pattern

Entrez Gene ID^*

11446659

100819601

18099126

829727

103834937

100242171

107912858

107895547

106436624

106361284

102620027

101250424

102581697

107778829

107759901

4330923

100280239

123145766

123128632

123406204

8082689

100837791

5721377

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 11446659 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11446659 (mtr-u.5 coexpression data)


Species	mtr	gma	ppo	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	3	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 11446659 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11446659 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**