ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	RecQl3	DEAD/DEAH box RNA helicase family protein
ath-r.7	RecQl3	DEAD/DEAH box RNA helicase family protein
ath-m.9	RecQl3	DEAD/DEAH box RNA helicase family protein
ath-e.2	RecQl3	DEAD/DEAH box RNA helicase family protein
ath-m.4.bio	RecQl3	DEAD/DEAH box RNA helicase family protein
ath-m.4.hor	RecQl3	DEAD/DEAH box RNA helicase family protein
ath-m.4.lig	RecQl3	DEAD/DEAH box RNA helicase family protein
ath-m.4.str	RecQl3	DEAD/DEAH box RNA helicase family protein
ath-m.4.tis	RecQl3	DEAD/DEAH box RNA helicase family protein
gma-u.5	100819601	ATP-dependent DNA helicase Q-like 3
vvi-u.5	100242171	ATP-dependent DNA helicase Q-like 3
ppo-u.5	18099126	ATP-dependent DNA helicase Q-like 3
mtr-u.5	11446659	ATP-dependent DNA helicase Q-like 3
sly-u.5	101250424	ATP-dependent DNA helicase Q-like 3
osa-u.5	4330923	ATP-dependent DNA helicase Q-like 3
zma-u.5	100280239	ATP-dependent DNA helicase Q-like

Annotation

functional annotation

KEGG

ath03440 [list] [network] Homologous recombination (60 genes)

ath03460 [list] [network] Fanconi anemia pathway (46 genes)

GO BP

GO:0006310 [list] [network] DNA recombination

(113 genes)

IDA

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

GO:0009378 [list] [network] four-way junction helicase activity	(2 genes)	IDA
GO:0004386 [list] [network] helicase activity	(62 genes)	IDA

Protein

NP_195299.2 [sequence] [blastp]
NP_849500.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto 2, nucl_plas 2, E.R. 1, cyto_plas 1	(predict for NP_195299.2)
nucl 8, cyto 2	(predict for NP_849500.1)

Subcellular
localization
TargetP

other 7, mito 3	(predict for NP_195299.2)
other 8	(predict for NP_849500.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for RecQl3	ath-r.7 for RecQl3	ath-m.9 for RecQl3	ath-e.2 for RecQl3	ath-m.4.bio for RecQl3	ath-m.4.hor for RecQl3	ath-m.4.lig for RecQl3	ath-m.4.str for RecQl3	ath-m.4.tis for RecQl3	gma-u.5 for 100819601	vvi-u.5 for 100242171	ppo-u.5 for 18099126	mtr-u.5 for 11446659	sly-u.5 for 101250424	osa-u.5 for 4330923	zma-u.5 for 100280239

Ortholog

Ortholog ID: 10898

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

RecQl3

Function^*

DEAD/DEAH box RNA helicase family protein

ATP-dependent DNA helicase Q-like 3

ATP-dependent DNA helicase Q-like

ATP-dependent DNA helicase Q-like 3

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03410	Base excision repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03440	Homologous recombination	2
bna03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03440	Homologous recombination	2
bna03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04814	Motor proteins	6
ghi03440	Homologous recombination	4
ghi03460	Fanconi anemia pathway	2
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03440	Homologous recombination	4
ghi03460	Fanconi anemia pathway	2
ghi04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04814	Motor proteins	2
gma00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03440	Homologous recombination	3
mtr03460	Fanconi anemia pathway	2
mtr04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	5
nta04130	SNARE interactions in vesicular transport	2
nta03060	Protein export	2
nta04145	Phagosome	2
nta03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03440	Homologous recombination	2
nta03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	3
tae03440	Homologous recombination	2
tae03460	Fanconi anemia pathway	2

Expression

Expression pattern

Entrez Gene ID^*

829727

103834937

106436624

106361284

107912858

107895547

102620027

100819601

100242171

18099126

11446659

101250424

102581697

107778829

107759901

4330923

100280239

123145766

123128632

123406204

8082689

100837791

5721377

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to RecQl3 (ath-u.5 coexpression data)

Top 50 enrichment test to RecQl3 (ath-u.5 coexpression data)


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	hvu	bna	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	9	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to RecQl3 (ath-u.5 coexpression data)

Top 50 enrichment test to RecQl3 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**