ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bdi-r.1	100821927	protein REVEILLE 6
bdi-r.1	100832932	protein REVEILLE 6
tae-r.2	123149146	protein REVEILLE 6
tae-r.2	123137616	protein REVEILLE 6
tae-r.2	123145102	protein REVEILLE 6
hvu-r.1	123402347	protein REVEILLE 6-like
hvu-r.1	123411095	protein REVEILLE 6-like
osa-u.5	9272080	protein REVEILLE 6
osa-u.5	4341799	protein REVEILLE 6
zma-u.5	100283068	uncharacterized LOC100283068
zma-u.5	100274468	uncharacterized LOC100274468
sbi-r.1	8083191	protein REVEILLE 6
sbi-r.1	8076033	protein REVEILLE 6
ath-u.5	AT4G01280	Homeodomain-like superfamily protein
ath-u.5	AT5G52660	Homeodomain-like superfamily protein
ath-u.5	ASG4	Homeodomain-like superfamily protein
gma-u.5	MYB136	MYB transcription factor MYB136
gma-u.5	100791774	protein REVEILLE 6
gma-u.5	100783949	transcription factor ASG4-like
sly-u.5	101259846	protein REVEILLE 6
sly-u.5	ARS1	R1-MYB type transcription factor ARS1
bra-r.6	103836888	protein REVEILLE 5
bra-r.6	103844654	protein REVEILLE 3
bra-r.6	103844751	protein REVEILLE 6
vvi-u.5	100252586	protein REVEILLE 6
vvi-u.5	100855334	protein REVEILLE 6
ppo-u.5	7457357	protein REVEILLE 5
ppo-u.5	7496991	protein REVEILLE 5
ppo-u.5	7468344	protein REVEILLE 6
mtr-u.5	25480372	protein REVEILLE 6
mtr-u.5	25500834	protein REVEILLE 5
ghi-r.1	107922784	protein REVEILLE 6
ghi-r.1	107923855	protein REVEILLE 5
ghi-r.1	107940393	protein REVEILLE 5
bna-r.1	106365655	protein REVEILLE 5
bna-r.1	106365548	protein REVEILLE 5-like
sot-r.1	102583130	protein REVEILLE 6
sot-r.1	102586661	protein REVEILLE 6
cit-r.1	102627121	protein REVEILLE 6
cit-r.1	102620405	protein REVEILLE 3
cit-r.1	127900936	protein REVEILLE 3-like
nta-r.1	107786318	protein REVEILLE 6
nta-r.1	107767388	protein REVEILLE 6
nta-r.1	107827724	protein REVEILLE 3-like

Top 50 coexpressed genes to 100821927 (bdi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100821927 (bdi-r.1 coexpression data)

CoexMap"100821927"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003677 [list] [network] DNA binding

(1744 genes)

IEA

Protein

XP_003570106.1 [sequence] [blastp]
XP_010235824.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9	(predict for XP_003570106.1)
nucl 9	(predict for XP_010235824.1)

Subcellular
localization
TargetP

other 8	(predict for XP_003570106.1)
other 8	(predict for XP_010235824.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100821927	bdi-r.1 for 100832932	tae-r.2 for 123149146	tae-r.2 for 123137616	tae-r.2 for 123145102	hvu-r.1 for 123402347	hvu-r.1 for 123411095	osa-u.5 for 9272080	osa-u.5 for 4341799	zma-u.5 for 100283068	zma-u.5 for 100274468	sbi-r.1 for 8083191	sbi-r.1 for 8076033	ath-u.5 for AT4G01280	ath-u.5 for AT5G52660	ath-u.5 for ASG4	gma-u.5 for MYB136	gma-u.5 for 100791774	gma-u.5 for 100783949	sly-u.5 for 101259846	sly-u.5 for ARS1	bra-r.6 for 103836888	bra-r.6 for 103844654	bra-r.6 for 103844751	vvi-u.5 for 100252586	vvi-u.5 for 100855334	ppo-u.5 for 7457357	ppo-u.5 for 7496991	ppo-u.5 for 7468344	mtr-u.5 for 25480372	mtr-u.5 for 25500834	ghi-r.1 for 107922784	ghi-r.1 for 107923855	ghi-r.1 for 107940393	bna-r.1 for 106365655	bna-r.1 for 106365548	sot-r.1 for 102583130	sot-r.1 for 102586661	cit-r.1 for 102627121	cit-r.1 for 102620405	cit-r.1 for 127900936	nta-r.1 for 107786318	nta-r.1 for 107767388	nta-r.1 for 107827724

Ortholog

Ortholog ID: 2040

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

ASG4

MYB136

ARS1

Function^*

protein REVEILLE 6

protein REVEILLE 8

protein REVEILLE 6-like

protein REVEILLE 6

uncharacterized LOC100283068

uncharacterized LOC100274468

protein REVEILLE 6

Homeodomain-like superfamily protein

MYB transcription factor MYB136

protein REVEILLE 5

protein REVEILLE 6

R1-MYB type transcription factor ARS1

protein REVEILLE 5

protein REVEILLE 3

protein REVEILLE 6

protein REVEILLE 5

protein REVEILLE 6

protein REVEILLE 5

protein REVEILLE 6

protein REVEILLE 3

protein REVEILLE 3-like

protein REVEILLE 6

protein REVEILLE 3-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	6
tae00790	Folate biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03083	Polycomb repressive complex	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03022	Basal transcription factors	3
gma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04016	MAPK signaling pathway - plant	2
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2
bra00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	5
ppo04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	7
ppo04016	MAPK signaling pathway - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01232	Nucleotide metabolism	2
ppo01240	Biosynthesis of cofactors	2
ppo00500	Starch and sucrose metabolism	2
ppo03013	Nucleocytoplasmic transport	2
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3
sot04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04712	Circadian rhythm - plant	6
cit03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	2
cit03018	RNA degradation	2
cit00010	Glycolysis / Gluconeogenesis	2
cit01200	Carbon metabolism	2
cit01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	3

Expression

Expression pattern

Entrez Gene ID^*

100821927

100832932

123137616

123157324

123165247

123402347

123411095

9272080

4341799

100283068

100274468

8083191

8076033

827903

835343

839337

778054

100775747

100794389

101259846

101257705

103836888

103844654

103844751

100252586

100855334

7457357

7496991

7468344

25480372

25500834

107940393

107942656

107947321

106390852

102583130

102586661

102627121

102620405

127900936

107786318

107767388

107827724

The preparation time of this page was 0.2 [sec].


Species	bdi	tae	hvu	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	2	3	2	2	2	2	3	3	2	3	2	3	2	3	2	2	3	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100821927 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100821927 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**