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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107923855   protein REVEILLE 5 
 ghi-r.1   107904589   protein REVEILLE 6 
 ghi-r.1   107911506   protein REVEILLE 5 
 ghi-r.1   107922784   protein REVEILLE 6 
 ath-u.5   AT5G52660   Homeodomain-like superfamily protein 
 ath-u.5   ASG4   Homeodomain-like superfamily protein 
 ath-u.5   AT4G01280   Homeodomain-like superfamily protein 
 bra-r.6   103836888   protein REVEILLE 5 
 bra-r.6   103857116   protein REVEILLE 6 
 bra-r.6   103844751   protein REVEILLE 6 
 bna-r.1   106437552   protein REVEILLE 6 
 bna-r.1   106390852   protein REVEILLE 6 
 bna-r.1   106365548   protein REVEILLE 5-like 
 cit-r.1   127900936   protein REVEILLE 3-like 
 cit-r.1   102620405   protein REVEILLE 3 
 cit-r.1   102627121   protein REVEILLE 6 
 gma-u.5   778166   protein REVEILLE 6 
 gma-u.5   100775747   protein REVEILLE 5 
 gma-u.5   100783949   transcription factor ASG4-like 
 vvi-u.5   100855334   protein REVEILLE 6 
 vvi-u.5   100252586   protein REVEILLE 6 
 ppo-u.5   7468344   protein REVEILLE 6 
 ppo-u.5   7496991   protein REVEILLE 5 
 ppo-u.5   18106463   protein REVEILLE 6 
 mtr-u.5   25480372   protein REVEILLE 6 
 mtr-u.5   25500834   protein REVEILLE 5 
 sly-u.5   101259846   protein REVEILLE 6 
 sly-u.5   ARS1   R1-MYB type transcription factor ARS1 
 sot-r.1   102583130   protein REVEILLE 6 
 sot-r.1   102586661   protein REVEILLE 6 
 nta-r.1   107767388   protein REVEILLE 6 
 nta-r.1   107786318   protein REVEILLE 6 
 nta-r.1   107818464   protein REVEILLE 6 
 osa-u.5   9272080   protein REVEILLE 6 
 osa-u.5   4341799   protein REVEILLE 6 
 zma-u.5   100274468   uncharacterized LOC100274468 
 zma-u.5   100283068   uncharacterized LOC100283068 
 tae-r.2   123128007   protein REVEILLE 6 
 tae-r.2   123137616   protein REVEILLE 6 
 tae-r.2   123145102   protein REVEILLE 6 
 hvu-r.1   123411095   protein REVEILLE 6-like 
 hvu-r.1   123402347   protein REVEILLE 6-like 
 sbi-r.1   8076033   protein REVEILLE 6 
 sbi-r.1   8083191   protein REVEILLE 6 
 bdi-r.1   100821927   protein REVEILLE 6 
 bdi-r.1   100832932   protein REVEILLE 6 

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Top 50 coexpressed genes to 107923855 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107923855 (ghi-r.1 coexpression data)

CoexMap"107923855"


ghiLOC107923855 | Entrez gene ID : 107923855    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 3 3 3 3 2 3 2 2 2 3 2 2 3 2 2 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003677 [list] [network] DNA binding  (4831 genes)  IEA  
Protein XP_016709501.1 [sequence] [blastp]
XP_040936899.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  chlo 2  (predict for XP_016709501.1)
nucl 6,  chlo 3,  cyto_nucl 3,  cysk_nucl 3,  nucl_plas 3  (predict for XP_040936899.1)
Subcellular
localization
TargetP
chlo 4,  other 3  (predict for XP_016709501.1)
chlo 4,  other 3  (predict for XP_040936899.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107923855
ghi-r.1
for
107904589
ghi-r.1
for
107911506
ghi-r.1
for
107922784
ath-u.5
for
AT5G52660
ath-u.5
for
ASG4
ath-u.5
for
AT4G01280
bra-r.6
for
103836888
bra-r.6
for
103857116
bra-r.6
for
103844751
bna-r.1
for
106437552
bna-r.1
for
106390852
bna-r.1
for
106365548
cit-r.1
for
127900936
cit-r.1
for
102620405
cit-r.1
for
102627121
gma-u.5
for
778166
gma-u.5
for
100775747
gma-u.5
for
100783949
vvi-u.5
for
100855334
vvi-u.5
for
100252586
ppo-u.5
for
7468344
ppo-u.5
for
7496991
ppo-u.5
for
18106463
mtr-u.5
for
25480372
mtr-u.5
for
25500834
sly-u.5
for
101259846
sly-u.5
for
ARS1
sot-r.1
for
102583130
sot-r.1
for
102586661
nta-r.1
for
107767388
nta-r.1
for
107786318
nta-r.1
for
107818464
osa-u.5
for
9272080
osa-u.5
for
4341799
zma-u.5
for
100274468
zma-u.5
for
100283068
tae-r.2
for
123128007
tae-r.2
for
123137616
tae-r.2
for
123145102
hvu-r.1
for
123411095
hvu-r.1
for
123402347
sbi-r.1
for
8076033
sbi-r.1
for
8083191
bdi-r.1
for
100821927
bdi-r.1
for
100832932


Ortholog ID: 2040
Species ghi ghi ghi ath ath ath bra bra bra bna cit cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr sly sly sot sot nta nta nta osa osa zma zma tae tae tae hvu hvu sbi sbi bdi bdi
Symbol LOC107940393 LOC107942656 LOC107947321 AT5G52660 ASG4 AT4G01280 LOC103836888 LOC103844751 LOC103844654 LOC106390852 LOC127900936 LOC102620405 LOC102627121 LOC100775747 LOC100794389 MYB136 LOC100855334 LOC100252586 LOC7468344 LOC7496991 LOC7457357 LOC25480372 LOC25500834 LOC101259846 ARS1 LOC102583130 LOC102586661 LOC107767388 LOC107786318 LOC107827724 LOC9272080 LOC4341799 LOC100274468 LOC100283068 LOC123137616 LOC123157324 LOC123165247 LOC123411095 LOC123402347 LOC8076033 LOC8083191 LOC100821927 LOC100832932
Function* protein REVEILLE 5 protein REVEILLE 6 protein REVEILLE 6 Homeodomain-like superfamily protein Homeodomain-like superfamily protein Homeodomain-like superfamily protein protein REVEILLE 5 protein REVEILLE 6 protein REVEILLE 3 protein REVEILLE 6 protein REVEILLE 3-like protein REVEILLE 3 protein REVEILLE 6 protein REVEILLE 5 protein REVEILLE 6 MYB transcription factor MYB136 protein REVEILLE 6 protein REVEILLE 6 protein REVEILLE 6 protein REVEILLE 5 protein REVEILLE 5 protein REVEILLE 6 protein REVEILLE 5 protein REVEILLE 6 R1-MYB type transcription factor ARS1 protein REVEILLE 6 protein REVEILLE 6 protein REVEILLE 6 protein REVEILLE 6 protein REVEILLE 3-like protein REVEILLE 6 protein REVEILLE 6 uncharacterized LOC100274468 uncharacterized LOC100283068 protein REVEILLE 6 protein REVEILLE 6 protein REVEILLE 8 protein REVEILLE 6-like protein REVEILLE 6-like protein REVEILLE 6 protein REVEILLE 6 protein REVEILLE 6 protein REVEILLE 6
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04016 MAPK signaling pathway - plant 2
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
bra00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
cit03018 RNA degradation 2
cit00010 Glycolysis / Gluconeogenesis 2
cit01200 Carbon metabolism 2
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 6
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 3
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01232 Nucleotide metabolism 2
ppo01240 Biosynthesis of cofactors 2
ppo00500 Starch and sucrose metabolism 2
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 7
ppo04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 5
ppo04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
tae00790 Folate biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107940393 107942656 107947321 835343 839337 827903 103836888 103844751 103844654 106390852 127900936 102620405 102627121 100775747 100794389 778054 100855334 100252586 7468344 7496991 7457357 25480372 25500834 101259846 101257705 102583130 102586661 107767388 107786318 107827724 9272080 4341799 100274468 100283068 123137616 123157324 123165247 123411095 123402347 8076033 8083191 100821927 100832932
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