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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103857672   E3 ubiquitin-protein ligase arih1 
 bna-r.1   106437714   E3 ubiquitin-protein ligase RSL1 
 bna-r.1   106365917   E3 ubiquitin-protein ligase ARIH1 
 ath-u.5   AT4G19670   RING/U-box superfamily protein 
 ghi-r.1   107906003   E3 ubiquitin-protein ligase RNF216 
 ghi-r.1   107958316   E3 ubiquitin-protein ligase RNF216 
 cit-r.1   102618748   E3 ubiquitin-protein ligase RSL1 
 gma-u.5   RTRP3   reverse transcriptase-like domain-containing RBR protein 
 gma-u.5   RTRP4   reverse transcriptase-like domain-containing RBR protein 
 vvi-u.5   100263135   E3 ubiquitin-protein ligase RSL1 
 ppo-u.5   18103891   E3 ubiquitin-protein ligase RSL1 
 ppo-u.5   7481780   E3 ubiquitin-protein ligase RSL1 
 mtr-u.5   11414406   E3 ubiquitin-protein ligase dbl4 
 sly-u.5   101249984   E3 ubiquitin-protein ligase RSL1 
 nta-r.1   107789029   E3 ubiquitin-protein ligase RSL1 
 nta-r.1   107791118   E3 ubiquitin-protein ligase RSL1 
 osa-u.5   4352863   ATP-dependent RNA helicase DEAH12, chloroplastic 
 zma-u.5   100281540   uncharacterized LOC100281540 
 tae-r.2   123119142   ATP-dependent RNA helicase DEAH12, chloroplastic 
 tae-r.2   123110131   ATP-dependent RNA helicase DEAH12, chloroplastic 
 tae-r.2   123102016   ATP-dependent RNA helicase DEAH12, chloroplastic 
 hvu-r.1   123395390   ATP-dependent RNA helicase DEAH12, chloroplastic 
 sbi-r.1   8065234   ATP-dependent RNA helicase DEAH12, chloroplastic 
 bdi-r.1   100826894   ATP-dependent RNA helicase DEAH12, chloroplastic 

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Top 50 coexpressed genes to 103857672 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103857672 (bra-r.6 coexpression data)

CoexMap"103857672"


braLOC103857672 | Entrez gene ID : 103857672    
Species bra bna ath ghi cit gma vvi ppo mtr sly nta osa zma tae hvu sbi bdi sot cre
Paralog 1 2 1 2 1 2 1 2 1 1 2 1 1 3 1 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0032436 [list] [network] positive regulation of proteasomal ubiquitin-dependent protein catabolic process  (64 genes)  IEA  
GO:0000209 [list] [network] protein polyubiquitination  (133 genes)  IEA  
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (435 genes)  IEA  
GO CC
GO:0000151 [list] [network] ubiquitin ligase complex  (233 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (7940 genes)  IEA  
GO MF
GO:0031624 [list] [network] ubiquitin conjugating enzyme binding  (63 genes)  IEA  
GO:0004523 [list] [network] RNA-DNA hybrid ribonuclease activity  (265 genes)  IEA  
GO:0061630 [list] [network] ubiquitin protein ligase activity  (295 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (1500 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (5846 genes)  IEA  
Protein XP_009133147.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  chlo 1,  vacu 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_009133147.2)
Subcellular
localization
TargetP
other 9  (predict for XP_009133147.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103857672
bna-r.1
for
106437714
bna-r.1
for
106365917
ath-u.5
for
AT4G19670
ghi-r.1
for
107906003
ghi-r.1
for
107958316
cit-r.1
for
102618748
gma-u.5
for
RTRP3
gma-u.5
for
RTRP4
vvi-u.5
for
100263135
ppo-u.5
for
18103891
ppo-u.5
for
7481780
mtr-u.5
for
11414406
sly-u.5
for
101249984
nta-r.1
for
107789029
nta-r.1
for
107791118
osa-u.5
for
4352863
zma-u.5
for
100281540
tae-r.2
for
123119142
tae-r.2
for
123110131
tae-r.2
for
123102016
hvu-r.1
for
123395390
sbi-r.1
for
8065234
bdi-r.1
for
100826894


Ortholog ID: 10870
Species bra bna bna ath ghi ghi cit gma gma vvi ppo ppo mtr sly nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC103857672 LOC106437714 LOC106365917 AT4G19670 LOC107906003 LOC107958316 LOC102618748 RTRP3 RTRP4 LOC100263135 LOC18103891 LOC7481780 LOC11414406 LOC101249984 LOC107789029 LOC107791118 LOC4352863 LOC100281540 LOC123119142 LOC123110131 LOC123102016 LOC123395390 LOC8065234 LOC100826894
Function* E3 ubiquitin-protein ligase arih1 E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase ARIH1 RING/U-box superfamily protein E3 ubiquitin-protein ligase RNF216 E3 ubiquitin-protein ligase RNF216 E3 ubiquitin-protein ligase RSL1 reverse transcriptase-like domain-containing RBR protein reverse transcriptase-like domain-containing RBR protein E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase dbl4 E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase RSL1 ATP-dependent RNA helicase DEAH12, chloroplastic uncharacterized LOC100281540 ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04016 MAPK signaling pathway - plant 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 6
ppo00270 Cysteine and methionine metabolism 4
ppo00670 One carbon pool by folate 4
ppo04981 Folate transport and metabolism 3
ppo00450 Selenocompound metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 4
nta04136 Autophagy - other 4
nta04382 Cornified envelope formation 4
nta04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 3
zma01200 Carbon metabolism 3
zma00052 Galactose metabolism 2
zma00520 Amino sugar and nucleotide sugar metabolism 2
zma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
bdi00020 Citrate cycle (TCA cycle) 2
bdi00785 Lipoic acid metabolism 2
bdi01200 Carbon metabolism 2
bdi01210 2-Oxocarboxylic acid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103857672 106437714 106365917 827711 107906003 107958316 102618748 100784508 100783040 100263135 18103891 7481780 11414406 101249984 107789029 107791118 4352863 100281540 123119142 123110131 123102016 123395390 8065234 100826894
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