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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT4G19670   RING/U-box superfamily protein 
 ath-r.7   AT4G19670   RING/U-box superfamily protein 
 ath-m.9   AT4G19670   RING/U-box superfamily protein 
 ath-e.2   AT4G19670   RING/U-box superfamily protein 
 ath-m.4.bio   AT4G19670   RING/U-box superfamily protein 
 ath-m.4.hor   AT4G19670   RING/U-box superfamily protein 
 ath-m.4.lig   AT4G19670   RING/U-box superfamily protein 
 ath-m.4.str   AT4G19670   RING/U-box superfamily protein 
 ath-m.4.tis   AT4G19670   RING/U-box superfamily protein 
 gma-u.5   RTRP3   reverse transcriptase-like domain-containing RBR protein 
 gma-u.5   RTRP4   reverse transcriptase-like domain-containing RBR protein 
 vvi-u.5   100263135   E3 ubiquitin-protein ligase RSL1 
 ppo-u.5   18103891   E3 ubiquitin-protein ligase RSL1 
 ppo-u.5   7481780   E3 ubiquitin-protein ligase RSL1 
 mtr-u.5   11414406   E3 ubiquitin-protein ligase dbl4 
 sly-u.5   101249984   E3 ubiquitin-protein ligase RSL1 
 osa-u.5   4352863   ATP-dependent RNA helicase DEAH12, chloroplastic 
 zma-u.5   100281540   uncharacterized LOC100281540 

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Top 50 coexpressed genes to AT4G19670 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT4G19670 (ath-u.5 coexpression data)

CoexMap"827711"


athAT4G19670 | Entrez gene ID : 827711      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 9 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001078409.1 [sequence] [blastp]
NP_001329045.1 [sequence] [blastp]
NP_001329046.1 [sequence] [blastp]
NP_001329047.1 [sequence] [blastp]
NP_001329048.1 [sequence] [blastp]
NP_001329049.1 [sequence] [blastp]
NP_193702.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  chlo 1,  vacu 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001078409.1)
nucl 7,  cyto 1,  chlo 1,  vacu 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001329045.1)
nucl 7,  cyto 1,  chlo 1,  vacu 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001329046.1)
nucl 7,  cyto 1,  chlo 1,  vacu 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001329047.1)
nucl 7,  cyto 1,  chlo 1,  vacu 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001329048.1)
nucl 7,  cyto 1,  chlo 1,  vacu 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001329049.1)
nucl 7,  cyto 1,  chlo 1,  vacu 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_193702.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001078409.1)
other 9  (predict for NP_001329045.1)
other 9  (predict for NP_001329046.1)
other 9  (predict for NP_001329047.1)
other 9  (predict for NP_001329048.1)
other 9  (predict for NP_001329049.1)
other 9  (predict for NP_193702.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT4G19670
ath-r.7
for
AT4G19670
ath-m.9
for
AT4G19670
ath-e.2
for
AT4G19670
ath-m.4.bio
for
AT4G19670
ath-m.4.hor
for
AT4G19670
ath-m.4.lig
for
AT4G19670
ath-m.4.str
for
AT4G19670
ath-m.4.tis
for
AT4G19670
gma-u.5
for
RTRP3
gma-u.5
for
RTRP4
vvi-u.5
for
100263135
ppo-u.5
for
18103891
ppo-u.5
for
7481780
mtr-u.5
for
11414406
sly-u.5
for
101249984
osa-u.5
for
4352863
zma-u.5
for
100281540


Ortholog ID: 10870
Species ath bra bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly nta nta osa zma tae tae hvu sbi bdi
Symbol AT4G19670 LOC103857672 LOC106437714 LOC106365917 LOC107958316 LOC107906003 LOC102618748 RTRP3 RTRP4 LOC100263135 LOC18103891 LOC7481780 LOC11414406 LOC101249984 LOC107791118 LOC107789029 LOC4352863 LOC100281540 LOC123119142 LOC123102016 LOC123395390 LOC8065234 LOC100826894
Function* RING/U-box superfamily protein E3 ubiquitin-protein ligase arih1 E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase ARIH1 E3 ubiquitin-protein ligase RNF216 E3 ubiquitin-protein ligase RNF216 E3 ubiquitin-protein ligase RSL1 reverse transcriptase-like domain-containing RBR protein reverse transcriptase-like domain-containing RBR protein E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase dbl4 E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase RSL1 ATP-dependent RNA helicase DEAH12, chloroplastic uncharacterized LOC100281540 ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04016 MAPK signaling pathway - plant 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 6
ppo00270 Cysteine and methionine metabolism 4
ppo00670 One carbon pool by folate 4
ppo04981 Folate transport and metabolism 3
ppo00450 Selenocompound metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 4
nta04136 Autophagy - other 4
nta04382 Cornified envelope formation 4
nta04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 3
zma01200 Carbon metabolism 3
zma00052 Galactose metabolism 2
zma00520 Amino sugar and nucleotide sugar metabolism 2
zma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
bdi00020 Citrate cycle (TCA cycle) 2
bdi00785 Lipoic acid metabolism 2
bdi01200 Carbon metabolism 2
bdi01210 2-Oxocarboxylic acid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827711 103857672 106437714 106365917 107958316 107906003 102618748 100784508 100783040 100263135 18103891 7481780 11414406 101249984 107791118 107789029 4352863 100281540 123119142 123102016 123395390 8065234 100826894
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