Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8065234   ATP-dependent RNA helicase DEAH12, chloroplastic 
 zma-u.5   100281540   uncharacterized LOC100281540 
 osa-u.5   4352863   ATP-dependent RNA helicase DEAH12, chloroplastic 
 ath-u.5   AT4G19670   RING/U-box superfamily protein 
 gma-u.5   RTRP3   reverse transcriptase-like domain-containing RBR protein 
 gma-u.5   RTRP4   reverse transcriptase-like domain-containing RBR protein 
 sly-u.5   101249984   E3 ubiquitin-protein ligase RSL1 
 vvi-u.5   100263135   E3 ubiquitin-protein ligase RSL1 
 ppo-u.5   18103891   E3 ubiquitin-protein ligase RSL1 
 ppo-u.5   7481780   E3 ubiquitin-protein ligase RSL1 
 mtr-u.5   11414406   E3 ubiquitin-protein ligase dbl4 

close


Top 50 coexpressed genes to 8065234 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 8065234 (sbi-r.1 coexpression data)

CoexMap"8065234"


sbiLOC8065234 | Entrez gene ID : 8065234    
Species sbi zma osa ath gma sly vvi ppo mtr hvu sot tae nta bra cit ghi bna bdi cre
Paralog 1 1 1 1 2 1 1 2 1 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0032436 [list] [network] positive regulation of proteasomal ubiquitin-dependent protein catabolic process  (28 genes)  IEA  
GO:0000209 [list] [network] protein polyubiquitination  (65 genes)  IEA  
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (251 genes)  IEA  
GO CC
GO:0000151 [list] [network] ubiquitin ligase complex  (143 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (4816 genes)  IEA  
GO MF
GO:0031624 [list] [network] ubiquitin conjugating enzyme binding  (30 genes)  IEA  
GO:0004523 [list] [network] RNA-DNA hybrid ribonuclease activity  (32 genes)  IEA  
GO:0061630 [list] [network] ubiquitin protein ligase activity  (192 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (824 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (3505 genes)  IEA  
Protein XP_021321871.1 [sequence] [blastp]
XP_021321872.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 1,  pero 1,  cyto_pero 1  (predict for XP_021321871.1)
nucl 6,  cyto 1,  pero 1,  cyto_pero 1  (predict for XP_021321872.1)
Subcellular
localization
TargetP
other 8  (predict for XP_021321871.1)
other 8  (predict for XP_021321872.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8065234

.
zma-u.5
for
100281540

.
osa-u.5
for
4352863

.
ath-u.5
for
AT4G19670

.
gma-u.5
for
RTRP3

.
gma-u.5
for
RTRP4

.
sly-u.5
for
101249984

.
vvi-u.5
for
100263135

.
ppo-u.5
for
18103891

.
ppo-u.5
for
7481780

.
mtr-u.5
for
11414406

.


Ortholog ID: 10870
Species ath gma gma sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi cit bdi nta nta
Symbol AT4G19670 RTRP3 RTRP4 LOC101249984 LOC4352863 LOC100281540 LOC103857672 LOC100263135 LOC18103891 LOC7481780 LOC11414406 LOC123119142 LOC123102016 LOC123395390 LOC107958316 LOC107906003 LOC106437714 LOC106365917 LOC8065234 LOC102618748 LOC100826894 LOC107791118 LOC107789029
Function* RING/U-box superfamily protein reverse transcriptase-like domain-containing RBR protein reverse transcriptase-like domain-containing RBR protein E3 ubiquitin-protein ligase RSL1 ATP-dependent RNA helicase DEAH12, chloroplastic uncharacterized LOC100281540 E3 ubiquitin-protein ligase arih1 E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase dbl4 ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic E3 ubiquitin-protein ligase RNF216 E3 ubiquitin-protein ligase RNF216 E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase ARIH1 ATP-dependent RNA helicase DEAH12, chloroplastic E3 ubiquitin-protein ligase RSL1 ATP-dependent RNA helicase DEAH12, chloroplastic E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase RSL1
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04016 MAPK signaling pathway - plant 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 3
zma01200 Carbon metabolism 3
zma00052 Galactose metabolism 2
zma00520 Amino sugar and nucleotide sugar metabolism 2
zma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 6
ppo00270 Cysteine and methionine metabolism 4
ppo00670 One carbon pool by folate 4
ppo04981 Folate transport and metabolism 3
ppo00450 Selenocompound metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
bdi00020 Citrate cycle (TCA cycle) 2
bdi00785 Lipoic acid metabolism 2
bdi01200 Carbon metabolism 2
bdi01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 4
nta04136 Autophagy - other 4
nta04382 Cornified envelope formation 4
nta04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827711 100784508 100783040 101249984 4352863 100281540 103857672 100263135 18103891 7481780 11414406 123119142 123102016 123395390 107958316 107906003 106437714 106365917 8065234 102618748 100826894 107791118 107789029
The preparation time of this page was 0.2 [sec].