ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106371016	cryptochrome-2-like
ath-u.5	CRY1	cryptochrome 1
ath-u.5	CRY2	cryptochrome 2
gma-u.5	CRY1a	cryptochrome 1
gma-u.5	100233234	cryptochrome 2
gma-u.5	100786551	cryptochrome-1-like
vvi-u.5	100247664	cryptochrome-1
vvi-u.5	100254022	cryptochrome-1
ppo-u.5	7495156	cryptochrome-1
ppo-u.5	7486597	cryptochrome-1
ppo-u.5	18102473	cryptochrome-1
mtr-u.5	11418875	cryptochrome-1
mtr-u.5	25484452	cryptochrome-1
mtr-u.5	11428875	cryptochrome-1
sly-u.5	Cry1b	cryptochrome 1b
sly-u.5	CRY2	cryptochrome 2
sly-u.5	CRY1a	cryptochrome 1
osa-u.5	9270575	cryptochrome-1
osa-u.5	4329738	cryptochrome-1
osa-u.5	4336008	cryptochrome-1
zma-u.5	100277533	uncharacterized LOC100277533
zma-u.5	100502533	cryptochrome 2

Top 50 coexpressed genes to 106371016 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106371016 (bna-r.1 coexpression data)

CoexMap"106371016"

[Cytoscape]

Annotation

functional annotation

KEGG

bna04712 [list] [network] Circadian rhythm - plant (144 genes)

GO BP

GO:0032922 [list] [network] circadian regulation of gene expression	(8 genes)	IEA
GO:0043153 [list] [network] entrainment of circadian clock by photoperiod	(8 genes)	IEA
GO:0009785 [list] [network] blue light signaling pathway	(11 genes)	IEA

GO CC

GO:0005634 [list] [network] nucleus	(9971 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(16489 genes)	IEA

GO MF

GO:0009882 [list] [network] blue light photoreceptor activity	(6 genes)	IEA
GO:0071949 [list] [network] FAD binding	(207 genes)	IEA
GO:0003677 [list] [network] DNA binding	(6522 genes)	IEA

Protein

XP_013666486.2 [sequence] [blastp]
XP_013666487.2 [sequence] [blastp]
XP_048599363.1 [sequence] [blastp]
XP_048599364.1 [sequence] [blastp]
XP_048599365.1 [sequence] [blastp]

Subcellular
localization
wolf

mito 5, chlo 4, nucl 1, cyto 1, cyto_nucl 1	(predict for XP_013666486.2)
mito 5, chlo 4, nucl 1, cyto 1, cyto_nucl 1	(predict for XP_013666487.2)
mito 5, chlo 4, nucl 1, cyto 1, cyto_nucl 1	(predict for XP_048599363.1)
mito 5, chlo 4, nucl 1, cyto 1, cyto_nucl 1	(predict for XP_048599364.1)
mito 5, chlo 4, nucl 1, cyto 1, cyto_nucl 1	(predict for XP_048599365.1)

Subcellular
localization
TargetP

mito 6, other 4	(predict for XP_013666486.2)
mito 6, other 4	(predict for XP_013666487.2)
mito 6, other 4	(predict for XP_048599363.1)
mito 6, other 4	(predict for XP_048599364.1)
mito 6, other 4	(predict for XP_048599365.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106371016	ath-u.5 for CRY1	ath-u.5 for CRY2	gma-u.5 for CRY1a	gma-u.5 for 100233234	gma-u.5 for 100786551	vvi-u.5 for 100247664	vvi-u.5 for 100254022	ppo-u.5 for 7495156	ppo-u.5 for 7486597	ppo-u.5 for 18102473	mtr-u.5 for 11418875	mtr-u.5 for 25484452	mtr-u.5 for 11428875	sly-u.5 for Cry1b	sly-u.5 for CRY2	sly-u.5 for CRY1a	osa-u.5 for 9270575	osa-u.5 for 4329738	osa-u.5 for 4336008	zma-u.5 for 100277533	zma-u.5 for 100502533

Ortholog

Ortholog ID: 1712

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

LOC111197715

LOC106422131

CRY1

LOC103836576

CRY1

CRY2

CRY1a

CRY2

Cry1b

Function^*

cryptochrome-2

cryptochrome-1

cryptochrome circadian clock 1

cryptochrome-2

cryptochrome 1

cryptochrome 2

cryptochrome-1

cryptochrome 1

cryptochrome 2

cryptochrome-1

cryptochrome 2

cryptochrome 1b

cryptochrome-1-like

cryptochrome-1

cryptochrome 2

uncharacterized LOC100277533

cryptochrome-1

cryptochrome-1-like

cryptochrome-1

cryptochrome-1-like

cryptochrome-1

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00500	Starch and sucrose metabolism	2
bna04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00860	Porphyrin metabolism	4
ath00900	Terpenoid backbone biosynthesis	3
ath04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00500	Starch and sucrose metabolism	4
ath04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04712	Circadian rhythm - plant	4
ghi00062	Fatty acid elongation	2
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04712	Circadian rhythm - plant	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04712	Circadian rhythm - plant	2
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04148	Efferocytosis	2
vvi00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00280	Valine, leucine and isoleucine degradation	2
ppo00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01200	Carbon metabolism	3
sly00195	Photosynthesis	3
sly00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04712	Circadian rhythm - plant	3
sot00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04712	Circadian rhythm - plant	2
sot01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00562	Inositol phosphate metabolism	4
nta04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00562	Inositol phosphate metabolism	4
nta04712	Circadian rhythm - plant	2
nta04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04712	Circadian rhythm - plant	8
tae00053	Ascorbate and aldarate metabolism	3
tae01240	Biosynthesis of cofactors	3
tae04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00630	Glyoxylate and dicarboxylate metabolism	5
bdi01200	Carbon metabolism	5
bdi04712	Circadian rhythm - plant	2
bdi00710	Carbon fixation by Calvin cycle	2
bdi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	3
bdi04120	Ubiquitin mediated proteolysis	2
bdi04016	MAPK signaling pathway - plant	2

Expression

Expression pattern

Entrez Gene ID^*

111197715

106422131

103838805

103836576

826470

839529

107929100

107905111

102630424

102609249

100233233

100233234

100254022

100247664

7486597

18102473

11428875

25484452

543596

543688

102580483

102583141

107813393

107830603

4329738

9270575

100502533

100277533

100136971

100136972

123426879

123406235

110436666

110435145

100839051

100838321

5727125

The preparation time of this page was 0.3 [sec].


Species	bna	ath	gma	vvi	ppo	mtr	sly	osa	zma	hvu	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	1	2	3	2	3	3	3	3	2	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106371016 (bna-r.1 coexpression data)

Top 50 enrichment test to 106371016 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**