ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	111197715	cryptochrome-2
bna-r.1	106371016	cryptochrome-2-like
bna-r.1	106422131	cryptochrome-1
bna-r.1	106429586	cryptochrome-1-like
bra-r.6	103836576	cryptochrome-2
bra-r.6	103844260	cryptochrome-2
bra-r.6	CRY1	cryptochrome circadian clock 1
ath-u.5	CRY1	cryptochrome 1
ath-u.5	CRY2	cryptochrome 2
ghi-r.1	107905111	cryptochrome-1
ghi-r.1	121221044	cryptochrome-1
ghi-r.1	121217897	cryptochrome-1
cit-r.1	102630424	cryptochrome-1
cit-r.1	102609249	cryptochrome-1
gma-u.5	CRY1a	cryptochrome 1
gma-u.5	100233234	cryptochrome 2
gma-u.5	100786551	cryptochrome-1-like
vvi-u.5	100247664	cryptochrome-1
vvi-u.5	100254022	cryptochrome-1
ppo-u.5	7495156	cryptochrome-1
ppo-u.5	7486597	cryptochrome-1
ppo-u.5	18102473	cryptochrome-1
mtr-u.5	11418875	cryptochrome-1
mtr-u.5	25484452	cryptochrome-1
mtr-u.5	11428875	cryptochrome-1
sly-u.5	Cry1b	cryptochrome 1b
sly-u.5	CRY2	cryptochrome 2
sly-u.5	CRY1a	cryptochrome 1
sot-r.1	102583141	cryptochrome-1-like
sot-r.1	102580483	cryptochrome-1-like
sot-r.1	102588921	cryptochrome-1
nta-r.1	107790758	cryptochrome-1
nta-r.1	107790240	cryptochrome-1
nta-r.1	107813393	cryptochrome-1
osa-u.5	9270575	cryptochrome-1
osa-u.5	4329738	cryptochrome-1
osa-u.5	4336008	cryptochrome-1
zma-u.5	100277533	uncharacterized LOC100277533
zma-u.5	100502533	cryptochrome 2
tae-r.2	100136972	cryptochrome-1
tae-r.2	100136971	cryptochrome-1
tae-r.2	123045624	cryptochrome-1
hvu-r.1	123406235	cryptochrome-1
hvu-r.1	123401420	cryptochrome-1-like
hvu-r.1	123426879	cryptochrome-1-like
sbi-r.1	8078292	cryptochrome-1
sbi-r.1	110435145	cryptochrome-1-like
sbi-r.1	110436666	cryptochrome-1-like
bdi-r.1	100833505	cryptochrome-1
bdi-r.1	100838321	cryptochrome-1
bdi-r.1	100839051	cryptochrome-1
cre-r.1	CHLRE_06g295200v5	uncharacterized protein

Top 50 coexpressed genes to 111197715 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 111197715 (bna-r.1 coexpression data)

CoexMap"111197715"

[Cytoscape]

Annotation

functional annotation

KEGG

bna04712 [list] [network] Circadian rhythm - plant (144 genes)

GO BP

GO:0032922 [list] [network] circadian regulation of gene expression	(8 genes)	IEA
GO:0043153 [list] [network] entrainment of circadian clock by photoperiod	(8 genes)	IEA
GO:0009785 [list] [network] blue light signaling pathway	(11 genes)	IEA

GO CC

GO:0005634 [list] [network] nucleus	(9971 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(16489 genes)	IEA

GO MF

GO:0009882 [list] [network] blue light photoreceptor activity	(6 genes)	IEA
GO:0071949 [list] [network] FAD binding	(207 genes)	IEA
GO:0003677 [list] [network] DNA binding	(6522 genes)	IEA

Protein

XP_022547243.2 [sequence] [blastp]
XP_022547244.2 [sequence] [blastp]
XP_022547245.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, cyto 1, mito 1, nucl 1, cysk 1, cyto_mito 1, cysk_nucl 1, cyto_pero 1, mito_plas 1, cyto_E.R. 1, cyto_plas 1	(predict for XP_022547243.2)
chlo 5, chlo_mito 4, mito 1, nucl 1, cyto 1, cysk 1, nucl_plas 1	(predict for XP_022547244.2)
chlo 5, chlo_mito 4, mito 1, nucl 1, cyto 1, cysk 1, nucl_plas 1	(predict for XP_022547245.2)

Subcellular
localization
TargetP

other 6, mito 3	(predict for XP_022547243.2)
other 6, mito 3	(predict for XP_022547244.2)
other 6, mito 3	(predict for XP_022547245.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 111197715	bna-r.1 for 106371016	bna-r.1 for 106422131	bna-r.1 for 106429586	bra-r.6 for 103836576	bra-r.6 for 103844260	bra-r.6 for CRY1	ath-u.5 for CRY1	ath-u.5 for CRY2	ghi-r.1 for 107905111	ghi-r.1 for 121221044	ghi-r.1 for 121217897	cit-r.1 for 102630424	cit-r.1 for 102609249	gma-u.5 for CRY1a	gma-u.5 for 100233234	gma-u.5 for 100786551	vvi-u.5 for 100247664	vvi-u.5 for 100254022	ppo-u.5 for 7495156	ppo-u.5 for 7486597	ppo-u.5 for 18102473	mtr-u.5 for 11418875	mtr-u.5 for 25484452	mtr-u.5 for 11428875	sly-u.5 for Cry1b	sly-u.5 for CRY2	sly-u.5 for CRY1a	sot-r.1 for 102583141	sot-r.1 for 102580483	sot-r.1 for 102588921	nta-r.1 for 107790758	nta-r.1 for 107790240	nta-r.1 for 107813393	osa-u.5 for 9270575	osa-u.5 for 4329738	osa-u.5 for 4336008	zma-u.5 for 100277533	zma-u.5 for 100502533	tae-r.2 for 100136972	tae-r.2 for 100136971	tae-r.2 for 123045624	hvu-r.1 for 123406235	hvu-r.1 for 123401420	hvu-r.1 for 123426879	sbi-r.1 for 8078292	sbi-r.1 for 110435145	sbi-r.1 for 110436666	bdi-r.1 for 100833505	bdi-r.1 for 100838321	bdi-r.1 for 100839051	cre-r.1 for CHLRE_06g295200v5

Ortholog

Ortholog ID: 1712

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

CRY1

CRY2

CRY1a

Cry1b

CRY2

CRY1a

Function^*

cryptochrome-2

cryptochrome-1

cryptochrome-2-like

cryptochrome-2

cryptochrome circadian clock 1

cryptochrome 1

cryptochrome 2

cryptochrome-1

cryptochrome 1

cryptochrome 2

cryptochrome-1-like

cryptochrome-1

cryptochrome 1b

cryptochrome 2

cryptochrome 1

cryptochrome-1-like

cryptochrome-1

uncharacterized LOC100277533

cryptochrome 2

cryptochrome2

cryptochrome-1

cryptochrome-1-like

cryptochrome-1

cryptochrome-1-like

cryptochrome-1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00500	Starch and sucrose metabolism	2
bna04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00860	Porphyrin metabolism	4
ath00900	Terpenoid backbone biosynthesis	3
ath04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00500	Starch and sucrose metabolism	4
ath04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04712	Circadian rhythm - plant	4
ghi00062	Fatty acid elongation	2
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04712	Circadian rhythm - plant	6
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04712	Circadian rhythm - plant	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04148	Efferocytosis	2
vvi00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04712	Circadian rhythm - plant	2
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00280	Valine, leucine and isoleucine degradation	2
ppo00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04016	MAPK signaling pathway - plant	3
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01200	Carbon metabolism	3
sly00195	Photosynthesis	3
sly00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00860	Porphyrin metabolism	3
sly04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04712	Circadian rhythm - plant	2
sot01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04712	Circadian rhythm - plant	3
sot00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00562	Inositol phosphate metabolism	4
nta04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00562	Inositol phosphate metabolism	4
nta04712	Circadian rhythm - plant	2
nta04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04712	Circadian rhythm - plant	8
tae00053	Ascorbate and aldarate metabolism	3
tae01240	Biosynthesis of cofactors	3
tae04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04712	Circadian rhythm - plant	8
tae04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04075	Plant hormone signal transduction	2
hvu04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01240	Biosynthesis of cofactors	3
bdi04712	Circadian rhythm - plant	2
bdi00740	Riboflavin metabolism	2
bdi00260	Glycine, serine and threonine metabolism	2
bdi00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	3
bdi04120	Ubiquitin mediated proteolysis	2
bdi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00630	Glyoxylate and dicarboxylate metabolism	5
bdi01200	Carbon metabolism	5
bdi04712	Circadian rhythm - plant	2
bdi00710	Carbon fixation by Calvin cycle	2
bdi04146	Peroxisome	2

Expression

Expression pattern

Entrez Gene ID^*

111197715

106422131

106369426

103836576

103844260

103838805

826470

839529

107905111

121217897

107929100

102630424

102609249

100233233

100233234

100815428

100247664

100254022

7495156

7486597

18102473

11418875

25484452

11428875

543688

543596

544219

102583141

102580483

102588921

107790240

107813393

107830603

9270575

4329738

4336008

100277533

100502533

100194126

100136972

100136971

123189391

123406235

123401420

123426879

8078292

110435145

110436666

100833505

100838321

100839051

5727125

The preparation time of this page was 0.2 [sec].


Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	2	3	2	3	2	3	3	3	3	3	3	2	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 111197715 (bna-r.1 coexpression data)

Top 50 enrichment test to 111197715 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**