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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123127724   cryptochrome-1 
 tae-r.2   123127529   cryptochrome-1 
 tae-r.2   123045624   cryptochrome-1 
 tae-r.2   123053473   cryptochrome-1 
 hvu-r.1   123401420   cryptochrome-1-like 
 hvu-r.1   123426879   cryptochrome-1-like 
 hvu-r.1   123406235   cryptochrome-1 
 bdi-r.1   100838321   cryptochrome-1 
 bdi-r.1   100839051   cryptochrome-1 
 bdi-r.1   100833505   cryptochrome-1 
 osa-u.5   9270575   cryptochrome-1 
 osa-u.5   4329738   cryptochrome-1 
 osa-u.5   4336008   cryptochrome-1 
 zma-u.5   100502533   cryptochrome 2 
 zma-u.5   100277533   uncharacterized LOC100277533 
 sbi-r.1   8078292   cryptochrome-1 
 sbi-r.1   110435145   cryptochrome-1-like 
 sbi-r.1   110436666   cryptochrome-1-like 
 ath-u.5   CRY1   cryptochrome 1 
 ath-u.5   CRY2   cryptochrome 2 
 gma-u.5   100815428   cryptochrome-1-like 
 gma-u.5   CRY1a   cryptochrome 1 
 gma-u.5   100233234   cryptochrome 2 
 sly-u.5   Cry1b   cryptochrome 1b 
 sly-u.5   CRY1a   cryptochrome 1 
 sly-u.5   CRY2   cryptochrome 2 
 bra-r.6   103844260   cryptochrome-2 
 bra-r.6   103836576   cryptochrome-2 
 bra-r.6   CRY1   cryptochrome circadian clock 1 
 vvi-u.5   100254022   cryptochrome-1 
 vvi-u.5   100247664   cryptochrome-1 
 ppo-u.5   7495156   cryptochrome-1 
 ppo-u.5   7486597   cryptochrome-1 
 ppo-u.5   18102473   cryptochrome-1 
 mtr-u.5   11418875   cryptochrome-1 
 mtr-u.5   25484452   cryptochrome-1 
 mtr-u.5   11428875   cryptochrome-1 
 ghi-r.1   107929100   cryptochrome-1 
 ghi-r.1   107936243   cryptochrome-1 
 ghi-r.1   107940541   cryptochrome-1 
 bna-r.1   111197715   cryptochrome-2 
 bna-r.1   106424300   cryptochrome-2 
 bna-r.1   106369426   cryptochrome-2-like 
 sot-r.1   102588921   cryptochrome-1 
 sot-r.1   102583141   cryptochrome-1-like 
 sot-r.1   102580483   cryptochrome-1-like 
 cit-r.1   102609249   cryptochrome-1 
 cit-r.1   102630424   cryptochrome-1 
 nta-r.1   107813393   cryptochrome-1 
 nta-r.1   107820217   cryptochrome-1 
 nta-r.1   107830603   cryptochrome-1 
 cre-r.1   CHLRE_06g295200v5   uncharacterized protein 

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Top 50 coexpressed genes to 123127724 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123127724 (tae-r.2 coexpression data)

CoexMap"123127724"


taeLOC123127724 | Entrez gene ID : 123127724    
Species tae hvu bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 4 3 3 3 2 3 2 3 3 3 2 3 3 3 3 3 2 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG taes04712 [list] [network] Circadian rhythm - plant (179 genes)
GO BP
GO:0032922 [list] [network] circadian regulation of gene expression  (11 genes)  IEA  
GO:0043153 [list] [network] entrainment of circadian clock by photoperiod  (11 genes)  IEA  
GO:0009785 [list] [network] blue light signaling pathway  (12 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (8281 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (13575 genes)  IEA  
GO MF
GO:0009882 [list] [network] blue light photoreceptor activity  (9 genes)  IEA  
GO:0003904 [list] [network] deoxyribodipyrimidine photo-lyase activity  (19 genes)  IEA  
GO:0071949 [list] [network] FAD binding  (296 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (6662 genes)  IEA  
Protein XP_044403475.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 2,  chlo 1,  mito 1,  chlo_mito 1  (predict for XP_044403475.1)
Subcellular
localization
TargetP
mito 7,  other 5  (predict for XP_044403475.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123127724
tae-r.2
for
123127529
tae-r.2
for
123045624
tae-r.2
for
123053473
hvu-r.1
for
123401420
hvu-r.1
for
123426879
hvu-r.1
for
123406235
bdi-r.1
for
100838321
bdi-r.1
for
100839051
bdi-r.1
for
100833505
osa-u.5
for
9270575
osa-u.5
for
4329738
osa-u.5
for
4336008
zma-u.5
for
100502533
zma-u.5
for
100277533
sbi-r.1
for
8078292
sbi-r.1
for
110435145
sbi-r.1
for
110436666
ath-u.5
for
CRY1
ath-u.5
for
CRY2
gma-u.5
for
100815428
gma-u.5
for
CRY1a
gma-u.5
for
100233234
sly-u.5
for
Cry1b
sly-u.5
for
CRY1a
sly-u.5
for
CRY2
bra-r.6
for
103844260
bra-r.6
for
103836576
bra-r.6
for
CRY1
vvi-u.5
for
100254022
vvi-u.5
for
100247664
ppo-u.5
for
7495156
ppo-u.5
for
7486597
ppo-u.5
for
18102473
mtr-u.5
for
11418875
mtr-u.5
for
25484452
mtr-u.5
for
11428875
ghi-r.1
for
107929100
ghi-r.1
for
107936243
ghi-r.1
for
107940541
bna-r.1
for
111197715
bna-r.1
for
106424300
bna-r.1
for
106369426
sot-r.1
for
102588921
sot-r.1
for
102583141
sot-r.1
for
102580483
cit-r.1
for
102609249
cit-r.1
for
102630424
nta-r.1
for
107813393
nta-r.1
for
107820217
nta-r.1
for
107830603
cre-r.1
for
CHLRE_06g295200v5


Ortholog ID: 1712
Species tae tae tae hvu hvu hvu bdi bdi bdi osa osa osa zma zma zma sbi sbi sbi ath ath gma gma gma sly sly sly bra bra bra vvi vvi ppo ppo ppo mtr mtr mtr ghi ghi ghi bna bna bna sot sot sot cit cit nta nta nta cre
Symbol LOC100136972 LOC100136971 LOC123189391 LOC123401420 LOC123426879 LOC123406235 LOC100838321 LOC100839051 LOC100833505 LOC9270575 LOC4329738 LOC4336008 LOC100502533 LOC100277533 LOC100194126 LOC8078292 LOC110435145 LOC110436666 CRY1 CRY2 LOC100815428 CRY1a LOC100233234 Cry1b CRY1a CRY2 LOC103844260 LOC103836576 CRY1 LOC100254022 LOC100247664 LOC7495156 LOC7486597 LOC18102473 LOC11418875 LOC25484452 LOC11428875 LOC107929100 LOC107905111 LOC121217897 LOC111197715 LOC106369426 LOC106422131 LOC102588921 LOC102583141 LOC102580483 LOC102609249 LOC102630424 LOC107813393 LOC107830603 LOC107790240 CHLRE_06g295200v5
Function* cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1-like cryptochrome-1-like cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome 2 uncharacterized LOC100277533 cryptochrome2 cryptochrome-1 cryptochrome-1-like cryptochrome-1-like cryptochrome 1 cryptochrome 2 cryptochrome-1-like cryptochrome 1 cryptochrome 2 cryptochrome 1b cryptochrome 1 cryptochrome 2 cryptochrome-2 cryptochrome-2 cryptochrome circadian clock 1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-2 cryptochrome-2-like cryptochrome-1 cryptochrome-1 cryptochrome-1-like cryptochrome-1-like cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 8
tae00053 Ascorbate and aldarate metabolism 3
tae01240 Biosynthesis of cofactors 3
tae04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 8
tae04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
hvu04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 3
bdi04120 Ubiquitin mediated proteolysis 2
bdi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00630 Glyoxylate and dicarboxylate metabolism 5
bdi01200 Carbon metabolism 5
bdi04712 Circadian rhythm - plant 2
bdi00710 Carbon fixation by Calvin cycle 2
bdi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 3
bdi04712 Circadian rhythm - plant 2
bdi00740 Riboflavin metabolism 2
bdi00260 Glycine, serine and threonine metabolism 2
bdi00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 4
ath00900 Terpenoid backbone biosynthesis 3
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 4
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 3
sly00195 Photosynthesis 3
sly00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00860 Porphyrin metabolism 3
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 2
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04148 Efferocytosis 2
vvi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00280 Valine, leucine and isoleucine degradation 2
ppo00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04016 MAPK signaling pathway - plant 3
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 4
ghi00062 Fatty acid elongation 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 6
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 2
bna04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 2
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 3
sot00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00562 Inositol phosphate metabolism 4
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00562 Inositol phosphate metabolism 4
nta04712 Circadian rhythm - plant 2
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100136972 100136971 123189391 123401420 123426879 123406235 100838321 100839051 100833505 9270575 4329738 4336008 100502533 100277533 100194126 8078292 110435145 110436666 826470 839529 100815428 100233233 100233234 543688 544219 543596 103844260 103836576 103838805 100254022 100247664 7495156 7486597 18102473 11418875 25484452 11428875 107929100 107905111 121217897 111197715 106369426 106422131 102588921 102583141 102580483 102609249 102630424 107813393 107830603 107790240 5727125
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