ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	18105187	scarecrow-like protein 6
ppo-r.4	18105187	scarecrow-like protein 6
ppo-u.5	7465515	scarecrow-like protein 27
ppo-u.5	7480613	scarecrow-like protein 6
ppo-u.5	7461703	scarecrow-like protein 6
gma-u.5	100801785	scarecrow-like protein 6
gma-u.5	100792973	scarecrow-like protein 27
gma-u.5	100794596	scarecrow-like protein 6
mtr-u.5	120575826	scarecrow-like protein 6
mtr-u.5	25480239	scarecrow-like protein 6
mtr-u.5	25491659	scarecrow-like protein 6
ath-u.5	HAM1	GRAS family transcription factor
ath-u.5	HAM2	GRAS family transcription factor
ath-u.5	HAM3	GRAS family transcription factor
bra-r.6	103836942	scarecrow-like protein 6
bra-r.6	103858159	scarecrow-like protein 27
bra-r.6	103862870	scarecrow-like protein 22
vvi-u.5	100252271	scarecrow-like protein 22
vvi-u.5	100267664	scarecrow-like protein 27
ghi-r.1	107926170	scarecrow-like protein 6
ghi-r.1	107931299	GRAS family protein RAM1
ghi-r.1	107931739	scarecrow-like protein 27
bna-r.1	125577634	scarecrow-like protein 6
bna-r.1	106411510	scarecrow-like protein 22
bna-r.1	106432091	scarecrow-like protein 27
cit-r.1	102610953	scarecrow-like protein 6
cit-r.1	102613743	scarecrow-like protein 6
cit-r.1	102611258	scarecrow-like protein 27
sly-u.5	HAM	GRAS transcriptional regulator HAM
sly-u.5	GRAS24	GRAS family protein
sot-r.1	102602862	scarecrow-like protein 22
sot-r.1	102606202	scarecrow-like protein 22
nta-r.1	107807450	scarecrow-like protein 6
nta-r.1	107807449	scarecrow-like protein 22
nta-r.1	107802311	scarecrow-like protein 22
osa-u.5	107275984	scarecrow-like protein 6
osa-u.5	4330230	scarecrow-like protein 6
osa-u.5	4330231	scarecrow-like protein 6
zma-u.5	100274201	Scarecrow-like protein 6
zma-u.5	100382187	Scarecrow-like protein 6
zma-u.5	100381701	uncharacterized LOC100381701
tae-r.2	123088563	scarecrow-like protein 22
tae-r.2	123051684	scarecrow-like protein 6
hvu-r.1	123406350	scarecrow-like protein 6
hvu-r.1	123412246	scarecrow-like protein 22
hvu-r.1	123449969	scarecrow-like protein 6
sbi-r.1	8055973	scarecrow-like protein 6
sbi-r.1	110430902	scarecrow-like protein 6
sbi-r.1	8076216	scarecrow-like protein 27
bdi-r.1	100841394	scarecrow-like protein 22
bdi-r.1	100828697	scarecrow-like protein 27
bdi-r.1	100822245	scarecrow-like protein 6

Top 50 coexpressed genes to 18105187 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 18105187 (ppo-u.5 coexpression data)

CoexMap"18105187"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006355 [list] [network] regulation of DNA-templated transcription

(1948 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(3662 genes)

IEA

GO MF

GO:0043565 [list] [network] sequence-specific DNA binding	(847 genes)	IEA
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1363 genes)	IEA

Protein

XP_024441223.1 [sequence] [blastp]
XP_024441224.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, cyto 1, vacu 1, cysk 1	(predict for XP_024441223.1)
nucl 8, cyto 1, vacu 1, cysk 1	(predict for XP_024441224.1)

Subcellular
localization
TargetP

chlo 5, other 4	(predict for XP_024441223.1)
chlo 5, other 4	(predict for XP_024441224.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 18105187	ppo-r.4 for 18105187	ppo-u.5 for 7465515	ppo-u.5 for 7480613	ppo-u.5 for 7461703	gma-u.5 for 100801785	gma-u.5 for 100792973	gma-u.5 for 100794596	mtr-u.5 for 120575826	mtr-u.5 for 25480239	mtr-u.5 for 25491659	ath-u.5 for HAM1	ath-u.5 for HAM2	ath-u.5 for HAM3	bra-r.6 for 103836942	bra-r.6 for 103858159	bra-r.6 for 103862870	vvi-u.5 for 100252271	vvi-u.5 for 100267664	ghi-r.1 for 107926170	ghi-r.1 for 107931299	ghi-r.1 for 107931739	bna-r.1 for 125577634	bna-r.1 for 106411510	bna-r.1 for 106432091	cit-r.1 for 102610953	cit-r.1 for 102613743	cit-r.1 for 102611258	sly-u.5 for HAM	sly-u.5 for GRAS24	sot-r.1 for 102602862	sot-r.1 for 102606202	nta-r.1 for 107807450	nta-r.1 for 107807449	nta-r.1 for 107802311	osa-u.5 for 107275984	osa-u.5 for 4330230	osa-u.5 for 4330231	zma-u.5 for 100274201	zma-u.5 for 100382187	zma-u.5 for 100381701	tae-r.2 for 123088563	tae-r.2 for 123051684	hvu-r.1 for 123406350	hvu-r.1 for 123412246	hvu-r.1 for 123449969	sbi-r.1 for 8055973	sbi-r.1 for 110430902	sbi-r.1 for 8076216	bdi-r.1 for 100841394	bdi-r.1 for 100828697	bdi-r.1 for 100822245

Ortholog

Ortholog ID: 1014

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

HAM1

HAM2

HAM3

HAM

GRAS24

Function^*

scarecrow-like protein 27

scarecrow-like protein 6

scarecrow-like protein 27

scarecrow-like protein 6

GRAS family transcription factor

scarecrow-like protein 6

scarecrow-like protein 22

scarecrow-like protein 27

scarecrow-like protein 22

scarecrow-like protein 27

scarecrow-like protein 6

scarecrow-like protein 27

scarecrow-like protein 22

scarecrow-like protein 27

scarecrow-like protein 6

scarecrow-like protein 27

GRAS transcriptional regulator HAM

GRAS family protein

scarecrow-like protein 22

scarecrow-like protein 6

scarecrow-like protein 22

scarecrow-like protein 6

scarecrow-like protein 27

Scarecrow-like protein 6

uncharacterized LOC100381701

uncharacterized LOC100279420

scarecrow-like protein 6

scarecrow-like protein 22

scarecrow-like protein 6

scarecrow-like protein 22

scarecrow-like protein 27

scarecrow-like protein 6

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma02010	ABC transporters	2
gma00790	Folate biosynthesis	2
gma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04016	MAPK signaling pathway - plant	3
ath04075	Plant hormone signal transduction	3
ath03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00904	Diterpenoid biosynthesis	2
bra04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	3
vvi03018	RNA degradation	2
vvi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4
bna04382	Cornified envelope formation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4
bna04382	Cornified envelope formation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4
bna04382	Cornified envelope formation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03083	Polycomb repressive complex	4
nta04120	Ubiquitin mediated proteolysis	4
nta04141	Protein processing in endoplasmic reticulum	4
nta00190	Oxidative phosphorylation	2
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00750	Vitamin B6 metabolism	2
osa01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00270	Cysteine and methionine metabolism	3
zma00999	Biosynthesis of various plant secondary metabolites	3
zma02010	ABC transporters	3
zma04981	Folate transport and metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04016	MAPK signaling pathway - plant	2
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04016	MAPK signaling pathway - plant	2
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00650	Butanoate metabolism	2
hvu00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04075	Plant hormone signal transduction	2
hvu03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

7465515

7480613

7461703

100792973

100794596

100805945

120575826

25480239

25491659

819124

825234

828208

103836942

103862870

103830132

100252271

100267664

107945536

107945538

107924044

106432091

106391896

106353214

102610953

102613743

102611258

101252614

104648977

102602862

102606202

107763537

107763536

107810717

107275984

4331304

100274201

100381701

100279420

123106077

123181605

123406350

123412246

123449969

8067884

8059527

8058755

100841394

100828697

100834684

The preparation time of this page was 0.2 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	5	3	3	3	3	2	3	3	3	2	2	3	3	3	2	3	3	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 18105187 (ppo-u.5 coexpression data)

Top 50 enrichment test to 18105187 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**