ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	7481544	alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic
ppo-r.4	7481544	alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic
ppo-m.4	7481544	alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic
ppo-u.5	7481498	alpha-glucan phosphorylase, H isozyme
ppo-u.5	7463047	alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic
ppo-u.5	18097490	uncharacterized LOC18097490
gma-u.5	100806646	alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic
gma-u.5	100779066	glycogen phosphorylase 1
gma-u.5	100789789	alpha-glucan phosphorylase, H isozyme
mtr-u.5	11445705	alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic
mtr-u.5	25490769	alpha-glucan phosphorylase, H isozyme
mtr-u.5	25480821	alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic
ath-u.5	PHS1	Glycosyl transferase, family 35
ath-u.5	PHS2	alpha-glucan phosphorylase 2
vvi-u.5	100264186	uncharacterized LOC100264186
vvi-u.5	100257811	alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic
vvi-u.5	100245621	alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic
sly-u.5	101248295	alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic
sly-u.5	PHO1a	plastidial alpha-glucan phosphorylase
sly-u.5	101261874	uncharacterized LOC101261874
osa-u.5	4324810	alpha-glucan phosphorylase, H isozyme
osa-u.5	4334171	alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic
zma-u.5	pho1	starch phosphorylase1
zma-u.5	100285259	uncharacterized LOC100285259

Top 50 coexpressed genes to 7481544 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7481544 (ppo-u.5 coexpression data)

CoexMap"7481544"

[Cytoscape]

Annotation

functional annotation

KEGG

pop00500 [list] [network] Starch and sucrose metabolism (188 genes)

GO BP

GO:0005980 [list] [network] glycogen catabolic process

(4 genes)

IEA

GO CC

GO:0005737 [list] [network] cytoplasm

(6111 genes)

IEA

GO MF

GO:0008184 [list] [network] glycogen phosphorylase activity	(4 genes)	IEA
GO:0030170 [list] [network] pyridoxal phosphate binding	(105 genes)	IEA

Protein

XP_024465176.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 7, chlo_mito 5, mito 2, cyto_mito 1

(predict for XP_024465176.1)

Subcellular
localization
TargetP

chlo 9

(predict for XP_024465176.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7481544 .	ppo-r.4 for 7481544 .	ppo-m.4 for 7481544 .	ppo-u.5 for 7481498 .	ppo-u.5 for 7463047 .	ppo-u.5 for 18097490 .	gma-u.5 for 100806646 .	gma-u.5 for 100779066 .	gma-u.5 for 100789789 .	mtr-u.5 for 11445705 .	mtr-u.5 for 25490769 .	mtr-u.5 for 25480821 .	ath-u.5 for PHS1 .	ath-u.5 for PHS2 .	vvi-u.5 for 100264186 .	vvi-u.5 for 100257811 .	vvi-u.5 for 100245621 .	sly-u.5 for 101248295 .	sly-u.5 for PHO1a .	sly-u.5 for 101261874 .	osa-u.5 for 4324810 .	osa-u.5 for 4334171 .	zma-u.5 for pho1 .	zma-u.5 for 100285259 .

Ortholog

Ortholog ID: 1507

Species

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

cre

sbi

sot

cit

bdi

nta

Symbol

PHS2

PHS1

pho1

Function^*

alpha-glucan phosphorylase 2

Glycosyl transferase, family 35

alpha-glucan phosphorylase, H isozyme

glycogen phosphorylase 1

alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic

uncharacterized LOC101261874

alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic

alpha-glucan phosphorylase, H isozyme

starch phosphorylase1

uncharacterized LOC100285259

alpha-glucan phosphorylase 1

alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic

alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic

uncharacterized LOC18097490

alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic

alpha-glucan phosphorylase, H isozyme

glycogen phosphorylase 1

alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic

alpha-glucan phosphorylase, H isozyme-like

alpha-glucan phosphorylase, H isozyme

alpha-glucan phosphorylase, H isozyme-like

glycogen phosphorylase 1

alpha-glucan phosphorylase 1

uncharacterized protein

alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic

alpha-glucan phosphorylase, H isozyme

glycogen phosphorylase 1-like

alpha-glucan phosphorylase type H isozyme

alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic

alpha-glucan phosphorylase 2, cytosolic

alpha-glucan phosphorylase, H isozyme

alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic

alpha-1,4 glucan phosphorylase L-1 isozyme, chloroplastic/amyloplastic

alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00500	Starch and sucrose metabolism	9
ath00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00500	Starch and sucrose metabolism	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	5
gma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00970	Aminoacyl-tRNA biosynthesis	5
gma00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00730	Thiamine metabolism	2
sly01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03060	Protein export	2
sly00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00500	Starch and sucrose metabolism	11
osa00520	Amino sugar and nucleotide sugar metabolism	3
osa01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00500	Starch and sucrose metabolism	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00500	Starch and sucrose metabolism	10
zma00260	Glycine, serine and threonine metabolism	2
zma00261	Monobactam biosynthesis	2
zma00270	Cysteine and methionine metabolism	2
zma00300	Lysine biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00500	Starch and sucrose metabolism	7
zma01240	Biosynthesis of cofactors	2
zma00010	Glycolysis / Gluconeogenesis	2
zma00052	Galactose metabolism	2
zma00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04145	Phagosome	3
bra04517	IgSF CAM signaling	3
bra04814	Motor proteins	3
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00500	Starch and sucrose metabolism	3
vvi00195	Photosynthesis	2
vvi00730	Thiamine metabolism	2
vvi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00500	Starch and sucrose metabolism	5
vvi00511	Other glycan degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00500	Starch and sucrose metabolism	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04712	Circadian rhythm - plant	4
mtr00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00500	Starch and sucrose metabolism	6
mtr00520	Amino sugar and nucleotide sugar metabolism	2
mtr01250	Biosynthesis of nucleotide sugars	2
mtr04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	19
tae00520	Amino sugar and nucleotide sugar metabolism	3
tae01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	11
tae00010	Glycolysis / Gluconeogenesis	2
tae00030	Pentose phosphate pathway	2
tae00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00500	Starch and sucrose metabolism	2
ghi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
ghi01230	Biosynthesis of amino acids	2
ghi00230	Purine metabolism	2
ghi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00500	Starch and sucrose metabolism	15
ghi00520	Amino sugar and nucleotide sugar metabolism	2
ghi01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00500	Starch and sucrose metabolism	9
bna00860	Porphyrin metabolism	3
bna01240	Biosynthesis of cofactors	3
bna00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00500	Starch and sucrose metabolism	9
bna00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01200	Carbon metabolism	5
cre01230	Biosynthesis of amino acids	4
cre00500	Starch and sucrose metabolism	4
cre00030	Pentose phosphate pathway	4
cre01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01200	Carbon metabolism	5
cre00500	Starch and sucrose metabolism	5
cre01230	Biosynthesis of amino acids	4
cre00030	Pentose phosphate pathway	4
cre00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00500	Starch and sucrose metabolism	13
sbi00520	Amino sugar and nucleotide sugar metabolism	3
sbi01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00500	Starch and sucrose metabolism	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00970	Aminoacyl-tRNA biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00500	Starch and sucrose metabolism	11
sot00520	Amino sugar and nucleotide sugar metabolism	3
sot01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00500	Starch and sucrose metabolism	5
cit00520	Amino sugar and nucleotide sugar metabolism	2
cit01250	Biosynthesis of nucleotide sugars	2
cit04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00500	Starch and sucrose metabolism	6
cit00520	Amino sugar and nucleotide sugar metabolism	2
cit01250	Biosynthesis of nucleotide sugars	2
cit00073	Cutin, suberine and wax biosynthesis	2
cit00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00500	Starch and sucrose metabolism	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00500	Starch and sucrose metabolism	7
bdi00520	Amino sugar and nucleotide sugar metabolism	2
bdi01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	9
nta00520	Amino sugar and nucleotide sugar metabolism	2
nta01250	Biosynthesis of nucleotide sugars	2
nta00460	Cyanoamino acid metabolism	2
nta00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	6
nta04142	Lysosome	2
nta00730	Thiamine metabolism	2
nta01240	Biosynthesis of cofactors	2

Expression

Expression pattern

Entrez Gene ID^*

823850

822590

100789789

100779066

101248295

101261874

4334171

4324810

100170240

100285259

103875081

103854138

100257811

100245621

18097490

7463047

25490769

11443309

123105082

123062617

123444877

123444878

107905809

107892378

106410260

106371101

5719681

5725629

110431626

8060105

102578187

102577532

102625638

102606996

100827967

100828538

107810306

107771409

The preparation time of this page was 0.4 [sec].


Species	ppo	gma	mtr	ath	vvi	sly	osa	zma	sbi	nta	bra	cre	hvu	cit	bdi	sot	tae	bna	ghi
Paralog	6	3	3	2	3	3	2	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7481544 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7481544 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**