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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8085935   protein DCL homolog, chloroplastic 
 zma-u.5   100282044   DCL protein 
 osa-u.5   9268665   protein DCL homolog, chloroplastic 
 ath-u.5   AT3G46630   DCL protein (DUF3223) 
 gma-u.5   100818770   protein DCL homolog, chloroplastic 
 sly-u.5   101246421   protein DCL homolog, chloroplastic 
 vvi-u.5   100247085   protein DCL homolog, chloroplastic 
 ppo-u.5   18104844   protein DCL homolog, chloroplastic 
 ppo-u.5   18104839   protein DCL, chloroplastic 
 mtr-u.5   25489911   protein DCL homolog, chloroplastic 

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Top 50 coexpressed genes to 8085935 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8085935 (sbi-r.1 coexpression data)

CoexMap"8085935"


sbiLOC8085935 | Entrez gene ID : 8085935      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1901259 [list] [network] chloroplast rRNA processing  (5 genes)  IEA  
GO:0009658 [list] [network] chloroplast organization  (71 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (560 genes)  IEA  
GO MF
Protein XP_002466454.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  mito 3,  cyto 1,  cyto_mito 1  (predict for XP_002466454.1)
Subcellular
localization
TargetP
chlo 7,  mito 6  (predict for XP_002466454.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8085935

.
zma-u.5
for
100282044

.
osa-u.5
for
9268665

.
ath-u.5
for
AT3G46630

.
gma-u.5
for
100818770

.
sly-u.5
for
101246421

.
vvi-u.5
for
100247085

.
ppo-u.5
for
18104844

.
ppo-u.5
for
18104839

.
mtr-u.5
for
25489911

.


Ortholog ID: 9521
Species ath gma sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT3G46630 LOC100818770 LOC101246421 LOC9268665 LOC100282044 LOC103873593 LOC100247085 LOC18104839 LOC18104844 LOC25489911 LOC123049498 LOC123185605 LOC123430409 LOC107905603 LOC107958153 LOC106347710 LOC106411203 LOC8085935 LOC102585068 LOC102622144 LOC100827498 LOC107826767 LOC107796193
Function* DCL protein (DUF3223) protein DCL homolog, chloroplastic protein DCL homolog, chloroplastic protein DCL homolog, chloroplastic DCL protein protein DCL homolog, chloroplastic protein DCL homolog, chloroplastic protein DCL, chloroplastic protein DCL homolog, chloroplastic protein DCL homolog, chloroplastic protein DCL homolog, chloroplastic protein DCL homolog, chloroplastic protein DCL homolog, chloroplastic-like protein DCL homolog, chloroplastic protein DCL homolog, chloroplastic protein DCL homolog, chloroplastic-like protein DCL homolog, chloroplastic protein DCL homolog, chloroplastic protein DCL, chloroplastic protein DCL, chloroplastic protein DCL homolog, chloroplastic protein DCL homolog, chloroplastic protein DCL homolog, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00196 Photosynthesis - antenna proteins 6
ath00195 Photosynthesis 4
ath04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 5
osa00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00196 Photosynthesis - antenna proteins 3
bra00195 Photosynthesis 2
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 9
tae00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 8
tae00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 6
ghi03015 mRNA surveillance pathway 6
ghi03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 6
ghi03015 mRNA surveillance pathway 6
ghi03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 9
sbi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00340 Histidine metabolism 2
sot01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 7
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta03040 Spliceosome 4
nta03018 RNA degradation 3
nta00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
nta03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 823816 100818770 101246421 9268665 100282044 103873593 100247085 18104839 18104844 25489911 123049498 123185605 123430409 107905603 107958153 106347710 106411203 8085935 102585068 102622144 100827498 107826767 107796193
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