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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT2G43770   Transducin/WD40 repeat-like superfamily protein 
 ath-r.7   AT2G43770   Transducin/WD40 repeat-like superfamily protein 
 ath-m.9   AT2G43770   Transducin/WD40 repeat-like superfamily protein 
 ath-e.2   AT2G43770   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.bio   AT2G43770   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.hor   AT2G43770   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.lig   AT2G43770   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.str   AT2G43770   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.tis   AT2G43770   Transducin/WD40 repeat-like superfamily protein 
 gma-u.5   100803276   U5 small nuclear ribonucleoprotein 40 kDa protein 
 gma-u.5   100789793   U5 small nuclear ribonucleoprotein 40 kDa protein-like 
 vvi-u.5   100267975   uncharacterized LOC100267975 
 mtr-u.5   11428985   U5 small nuclear ribonucleoprotein 40 kDa protein 
 sly-u.5   WDR57   WD-repeat protein 57 
 osa-u.5   4341706   uncharacterized LOC4341706 
 zma-u.5   100193655   uncharacterized LOC100193655 
 zma-u.5   100216905   WD repeat-containing protein 57 

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Top 50 coexpressed genes to AT2G43770 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT2G43770 (ath-u.5 coexpression data)

CoexMap"818980"


athAT2G43770 | Entrez gene ID : 818980      
Species ath gma vvi mtr sly osa zma sbi nta bra cre hvu cit bdi ppo sot tae bna ghi
Paralog 9 2 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03040 [list] [network] Spliceosome (243 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (112 genes)  IMP  
GO CC
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (121 genes)  ISS  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_181905.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 2,  cyto_E.R. 2,  pero 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_181905.1)
Subcellular
localization
TargetP
chlo 6,  other 6  (predict for NP_181905.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT2G43770

.
ath-r.7
for
AT2G43770

.
ath-m.9
for
AT2G43770

.
ath-e.2
for
AT2G43770

.
ath-m.4.bio
for
AT2G43770

.
ath-m.4.hor
for
AT2G43770

.
ath-m.4.lig
for
AT2G43770

.
ath-m.4.str
for
AT2G43770

.
ath-m.4.tis
for
AT2G43770

.
gma-u.5
for
100803276

.
gma-u.5
for
100789793

.
vvi-u.5
for
100267975

.
mtr-u.5
for
11428985

.
sly-u.5
for
WDR57

.
osa-u.5
for
4341706

.
zma-u.5
for
100193655

.
zma-u.5
for
100216905

.


Ortholog ID: 8426
Species ath gma gma sly osa zma zma bra vvi mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta
Symbol AT2G43770 LOC100789793 LOC100803276 WDR57 LOC4341706 LOC100216905 LOC100193655 LOC103830226 LOC100267975 LOC11428985 LOC123158104 LOC123149413 LOC123407040 LOC107914597 LOC107896773 LOC106396168 LOC106447122 CHLRE_06g255400v5 LOC8069357 LOC102605588 LOC102624666 LOC100826831 LOC107782719
Function* Transducin/WD40 repeat-like superfamily protein U5 small nuclear ribonucleoprotein 40 kDa protein-like U5 small nuclear ribonucleoprotein 40 kDa protein WD-repeat protein 57 uncharacterized LOC4341706 WD repeat-containing protein 57 uncharacterized LOC100193655 U5 small nuclear ribonucleoprotein 40 kDa protein uncharacterized LOC100267975 U5 small nuclear ribonucleoprotein 40 kDa protein U5 small nuclear ribonucleoprotein 40 kDa protein U5 small nuclear ribonucleoprotein 40 kDa protein U5 small nuclear ribonucleoprotein 40 kDa protein U5 small nuclear ribonucleoprotein 40 kDa protein U5 small nuclear ribonucleoprotein 40 kDa protein U5 small nuclear ribonucleoprotein 40 kDa protein-like U5 small nuclear ribonucleoprotein 40 kDa protein-like uncharacterized protein U5 small nuclear ribonucleoprotein 40 kDa protein U5 small nuclear ribonucleoprotein 40 kDa protein uncharacterized LOC102624666 U5 small nuclear ribonucleoprotein 40 kDa protein uncharacterized LOC107782719
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 6
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 3
mtr03040 Spliceosome 3
mtr03083 Polycomb repressive complex 2
mtr00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 9
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 11
tae03040 Spliceosome 3
tae03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04148 Efferocytosis 2
ghi03040 Spliceosome 2
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04148 Efferocytosis 2
ghi03040 Spliceosome 2
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
sot03013 Nucleocytoplasmic transport 4
sot03015 mRNA surveillance pathway 4
sot03020 RNA polymerase 2
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 11
bdi03013 Nucleocytoplasmic transport 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818980 100789793 100803276 101256361 4341706 100216905 100193655 103830226 100267975 11428985 123158104 123149413 123407040 107914597 107896773 106396168 106447122 5722131 8069357 102605588 102624666 100826831 107782719
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