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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT5G42940   RING/U-box superfamily protein 
 ath-r.7   AT5G42940   RING/U-box superfamily protein 
 ath-m.9   AT5G42940   RING/U-box superfamily protein 
 ath-e.2   AT5G42940   RING/U-box superfamily protein 
 ath-m.4.bio   AT5G42940   RING/U-box superfamily protein 
 ath-m.4.hor   AT5G42940   RING/U-box superfamily protein 
 ath-m.4.lig   AT5G42940   RING/U-box superfamily protein 
 ath-m.4.str   AT5G42940   RING/U-box superfamily protein 
 ath-m.4.tis   AT5G42940   RING/U-box superfamily protein 
 ath-u.5   MBR1   RING/U-box superfamily protein 
 ath-u.5   MBR2   RING/U-box superfamily protein 
 ath-u.5   AT1G45180   RING/U-box superfamily protein 
 gma-u.5   100784575   probable E3 ubiquitin-protein ligase RHG1A 
 gma-u.5   100791026   probable E3 ubiquitin-protein ligase RHG1A 
 gma-u.5   100809024   E3 ubiquitin-protein ligase MBR2 
 vvi-u.5   100267740   probable E3 ubiquitin-protein ligase RHG1A 
 vvi-u.5   100258840   E3 ubiquitin-protein ligase MBR2 
 ppo-u.5   7465027   E3 ubiquitin-protein ligase MBR2 
 ppo-u.5   7462870   probable E3 ubiquitin-protein ligase RHG1A 
 ppo-u.5   7490042   E3 ubiquitin-protein ligase MBR2 
 mtr-u.5   11446940   E3 ubiquitin-protein ligase MBR2 
 mtr-u.5   11414526   probable E3 ubiquitin-protein ligase RHG1A 
 sly-u.5   101260877   E3 ubiquitin-protein ligase MBR2 
 sly-u.5   101261170   E3 ubiquitin-protein ligase MBR2-like 
 sly-u.5   101262398   probable E3 ubiquitin-protein ligase RHG1A 
 osa-u.5   9272591   probable E3 ubiquitin-protein ligase HIP1 
 zma-u.5   109943116   probable E3 ubiquitin-protein ligase HIP1 
 zma-u.5   100281500   uncharacterized LOC100281500 
 zma-u.5   100383211   putative RING zinc finger domain superfamily protein 

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Top 50 coexpressed genes to AT5G42940 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G42940 (ath-u.5 coexpression data)

CoexMap"834306"


athAT5G42940 | Entrez gene ID : 834306      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 12 3 2 3 2 3 1 3 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010218 [list] [network] response to far red light  (57 genes)  IDA  
GO:0009845 [list] [network] seed germination  (111 genes)  IDA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001330419.1 [sequence] [blastp]
NP_199108.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001330419.1)
nucl 10  (predict for NP_199108.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001330419.1)
other 7  (predict for NP_199108.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT5G42940
ath-r.7
for
AT5G42940
ath-m.9
for
AT5G42940
ath-e.2
for
AT5G42940
ath-m.4.bio
for
AT5G42940
ath-m.4.hor
for
AT5G42940
ath-m.4.lig
for
AT5G42940
ath-m.4.str
for
AT5G42940
ath-m.4.tis
for
AT5G42940
ath-u.5
for
MBR1
ath-u.5
for
MBR2
ath-u.5
for
AT1G45180
gma-u.5
for
100784575
gma-u.5
for
100791026
gma-u.5
for
100809024
vvi-u.5
for
100267740
vvi-u.5
for
100258840
ppo-u.5
for
7465027
ppo-u.5
for
7462870
ppo-u.5
for
7490042
mtr-u.5
for
11446940
mtr-u.5
for
11414526
sly-u.5
for
101260877
sly-u.5
for
101261170
sly-u.5
for
101262398
osa-u.5
for
9272591
zma-u.5
for
109943116
zma-u.5
for
100281500
zma-u.5
for
100383211


Ortholog ID: 1370
Species ath ath bra bna ghi ghi cit cit gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta osa zma zma tae tae hvu sbi bdi
Symbol AT5G42940 MBR2 LOC103844361 LOC106371878 LOC107938056 LOC107894280 LOC102620199 LOC102620487 LOC100809024 LOC100820322 LOC100258840 LOC100267740 LOC7465027 LOC7462870 LOC11446940 LOC11414526 LOC101249818 LOC101262398 LOC102587147 LOC102580028 LOC107797011 LOC107768864 LOC9272591 LOC109943116 LOC100281500 LOC123190785 LOC123054931 LOC123428152 LOC8068482 LOC100835376
Function* RING/U-box superfamily protein RING/U-box superfamily protein E3 ubiquitin-protein ligase MBR1 probable E3 ubiquitin-protein ligase RHG1A E3 ubiquitin-protein ligase MBR2 E3 ubiquitin-protein ligase MBR2 E3 ubiquitin-protein ligase MBR2-like E3 ubiquitin-protein ligase MBR2-like E3 ubiquitin-protein ligase MBR2 E3 ubiquitin-protein ligase MBR2 E3 ubiquitin-protein ligase MBR2 probable E3 ubiquitin-protein ligase RHG1A E3 ubiquitin-protein ligase MBR2 probable E3 ubiquitin-protein ligase RHG1A E3 ubiquitin-protein ligase MBR2 probable E3 ubiquitin-protein ligase RHG1A probable E3 ubiquitin-protein ligase RHG1A probable E3 ubiquitin-protein ligase RHG1A E3 ubiquitin-protein ligase MBR2-like E3 ubiquitin-protein ligase MBR2-like putative E3 ubiquitin-protein ligase RHG1A putative E3 ubiquitin-protein ligase RHG1A probable E3 ubiquitin-protein ligase HIP1 probable E3 ubiquitin-protein ligase HIP1 uncharacterized LOC100281500 probable E3 ubiquitin-protein ligase HIP1 probable E3 ubiquitin-protein ligase HIP1 probable E3 ubiquitin-protein ligase HIP1 probable E3 ubiquitin-protein ligase HIP1 probable E3 ubiquitin-protein ligase HIP1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bna00940 Phenylpropanoid biosynthesis 2
bna00240 Pyrimidine metabolism 2
bna00670 One carbon pool by folate 2
bna00790 Folate biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00310 Lysine degradation 2
ghi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00310 Lysine degradation 2
ghi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 2
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
nta04626 Plant-pathogen interaction 2
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
nta00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00020 Citrate cycle (TCA cycle) 2
zma00785 Lipoic acid metabolism 2
zma01200 Carbon metabolism 2
zma01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00020 Citrate cycle (TCA cycle) 2
zma00785 Lipoic acid metabolism 2
zma01200 Carbon metabolism 2
zma01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04016 MAPK signaling pathway - plant 3
tae04075 Plant hormone signal transduction 3
tae00920 Sulfur metabolism 3
tae01320 Sulfur cycle 3
tae00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 4
tae04016 MAPK signaling pathway - plant 3
tae04075 Plant hormone signal transduction 3
tae00250 Alanine, aspartate and glutamate metabolism 3
tae00760 Nicotinate and nicotinamide metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 3
bdi01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834306 829550 103844361 106371878 107938056 107894280 102620199 102620487 100809024 100820322 100258840 100267740 7465027 7462870 11446940 11414526 101249818 101262398 102587147 102580028 107797011 107768864 9272591 109943116 100281500 123190785 123054931 123428152 8068482 100835376
The preparation time of this page was 3.7 [sec].