cis; ACGTGGC

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
    ACGTGGC   BOXIIPCCHS
    ACGTGGCA  LRENPCABE [ref]
   CACGTGGC   EMBP1TAEM [ref] [ref] [ref]
   YACGTGGC   ABREATCONSENSUS [ref] [ref] [ref] [ref]
  MCACGTGGC   GBOXLERBCS [ref] [ref] [ref]
  TGACGTGGC   AUXRETGA2GMGH3 [ref] [ref] [ref]
  RTACGTGGCR  ABADESI1 [ref] [ref] [ref] [ref] [ref]
  GTACGTGGCG  ACGTSEED3 [ref] [ref] [ref]
  CCACGTGGCC  CPRFPCCHS [ref] [ref]
 GCCACGTGGC   ACGTROOT1 [ref] [ref] [ref]
 CCTACGTGGC   ABREA2HVA1 [ref] [ref]
 AGTACGTGGC   ABREMOTIFIOSRAB16B [ref]
 TCCACGTGGC   LREBOXIIPCCHS1 [ref]
 ACCACGTGGC   GBOXPC [ref]
  GTACGTGGCGC ABRE3OSRAB16 [ref] [ref]
  CTACGTGGCCA GBOXRELOSAMY3 [ref] [ref]
GGACACGTGGC   ABRETAEM [ref] [ref] [ref]
 CCTACGTGGCGG ABRE2HVA1 [ref] [ref]
TGACACGTGGCA  HY5AT [ref] [ref] [ref]
    ACGTGKC   ACGTABREMOTIFA2OSEM [ref] [ref]
  RYACGTGGYR  ABREATRD22 [ref] [ref]
    ACGTG     ABRELATERD1 [ref]
    ACGT      ACGTATERD1 [ref]

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of ACGTGGC

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of ACGTGGC.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.52At4g14540CCAAT-box binding transcription factor subunit B (NF-YB) (HAP3 ) (AHAP3) family CCAAT-HAP3
0.50At5g24930zinc finger (B-box type) family protein C2C2-CO-like
0.47At5g60850Dof-type zinc finger domain-containing protein ((OBP4)) C2C2-Dof
0.47At5g20220zinc knuckle (CCHC-type) family protein C2H2
0.46At5g47610zinc finger (C3HC4-type RING finger) family protein C3H
0.45At1g19000myb family transcription factor MYB-related
0.43At3g13040myb family transcription factor G2-like
-0.43At5g15150homeobox-leucine zipper protein 7 (HAT7) / HD-ZIP protein 7 / HD-ZIP protein (HB-3) ((ATHB-3, HAT7)) Homeobox
0.42At3g02830zinc finger (CCCH-type) family protein ((ZFN1)) C2H2
0.42At3g59060basic helix-loop-helix (bHLH) family protein ((PIL6)) BHLH

link to other 304 cis elements in ATTED

similar seq.
←ACGTGGC→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; GCCACGT
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
ACGTGGC1.000.09104
CGTGGCA0.940.08110
CACGTGG0.920.09112
GACACGT0.890.0976
ACACGTG0.850.1162
CCACGTG0.850.0872
GCCACGT0.830.0870
CGTGTCA0.820.0889
ACGTGTC0.820.1184
TACACGT0.790.09112