cis; ACGTGTC

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
    ACGTGTC  GADOWNAT [ref]
   TACGTGTC  ACGTABREMOTIFAOSOSEM [ref] [ref]
   TACGTGTC  ABREMOTIFAOSOSEM [ref] [ref]
 CGCACGTGTC  ABRE2HVA22 [ref] [ref]
 GCAACGTGTC  ABRE3HVA1 [ref] [ref]
 TCCACGTGTC  SGBFGMGMAUX28 [ref]
CGCCACGTGTCC ABREBNNAPA [ref] [ref] [ref]
    ACGTGKC  ACGTABREMOTIFA2OSEM [ref] [ref]
    ACGTG    ABRELATERD1 [ref]
    ACGT     ACGTATERD1 [ref]

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of ACGTGTC

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of ACGTGTC.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.68At4g27410no apical meristem (NAM) family protein (RD26) ((RD26)) NAC
0.67At5g12840CCAAT-binding transcription factor (CBF-B/NF-YA) family protein ((HAP2A)) CCAAT-HAP2
0.61At3g61890homeobox-leucine zipper protein 12 (HB-12) / HD-ZIP transcription factor 12 ((ATHB-12)) Homeobox
0.58At1g77450no apical meristem (NAM) family protein NAC
0.57At2g46270G-box binding factor 3 (GBF3) ((GBF3)) bZIP
0.56At1g01720no apical meristem (NAM) family protein ((ATAF1)) NAC
0.56At2g46680homeobox-leucine zipper protein 7 (HB-7) / HD-ZIP transcription factor 7 ((ATHB-7)) Homeobox
0.55At3g19580zinc finger (C2H2 type) protein 2 (AZF2) ((AZF2)) C2H2
0.54At4g34000ABA-responsive element-binding protein / abscisic acid responsive elements-binding factor (ABRE) / ABA-responsive elements-binding factor (ABF3) ((ABF3, DPBF5)) bZIP
0.53At3g19290ABA-responsive element-binding protein 2 (AREB2) ((ABF4, AREB2)) bZIP
0.52At1g52890no apical meristem (NAM) family protein NAC
0.51At4g36900AP2 domain-containing protein RAP2.10 (RAP2.10) AP2-EREBP
0.50At4g21440myb family transcription factor (MYB102) MYB
0.50At1g03970G-box binding factor 4 (GBF4) ((GBF4)) bZIP
0.49At5g60850Dof-type zinc finger domain-containing protein ((OBP4)) C2C2-Dof

link to other 304 cis elements in ATTED

similar seq.
←ACGTGTC→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; GACACGT
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
ACGTGTC1.000.1184
CGTGTCA0.970.0889
CACGTGT0.960.1292
ACACGTG0.950.1162
GACACGT0.900.0976
CGTGTCC0.900.0882
CACGTGG0.880.09112
AGACACG0.880.07112
ACGTGTA0.870.0682
CGCCACG0.860.06129