cis; CGCCACG

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
         CGCCACGTGTCC ABREBNNAPA [ref] [ref] [ref]
CGGCGGCCTCGCCACG      REGION1OSOSEM [ref] [ref]
          GCCAC       SORLIP1AT [ref] [ref]

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of CGCCACG

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of CGCCACG.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.68At1g01720no apical meristem (NAM) family protein ((ATAF1)) NAC
0.64At4g27410no apical meristem (NAM) family protein (RD26) ((RD26)) NAC
0.63At1g77450no apical meristem (NAM) family protein NAC
0.61At2g46270G-box binding factor 3 (GBF3) ((GBF3)) bZIP
0.58At5g12840CCAAT-binding transcription factor (CBF-B/NF-YA) family protein ((HAP2A)) CCAAT-HAP2
0.58At2g46680homeobox-leucine zipper protein 7 (HB-7) / HD-ZIP transcription factor 7 ((ATHB-7)) Homeobox
0.57At3g19580zinc finger (C2H2 type) protein 2 (AZF2) ((AZF2)) C2H2
0.56At1g52890no apical meristem (NAM) family protein NAC
0.54At4g21440myb family transcription factor (MYB102) MYB
0.54At5g05410DRE-binding protein (DREB2A) ((DREB2A)) AP2-EREBP
0.53At5g04340zinc finger (C2H2 type) family protein ((C2H2)) C2H2
0.52At3g61890homeobox-leucine zipper protein 12 (HB-12) / HD-ZIP transcription factor 12 ((ATHB-12)) Homeobox
0.52At3g19290ABA-responsive element-binding protein 2 (AREB2) ((ABF4, AREB2)) bZIP
0.50At1g22985AP2 domain-containing transcription factor, putative AP2-EREBP
0.49At5g22290no apical meristem (NAM) family protein NAC

link to other 304 cis elements in ATTED

similar seq.
←CGCCACG→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; CGTGGCG
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
CGCCACG1.000.06129
ACGTGTC0.860.1184
CACGTGT0.860.1292
AGACACG0.840.07112
CGTGTCA0.820.0889
AACACGT0.800.0794
ACACGTG0.800.1162
CGTGTCC0.790.0882
GCCGACC0.780.0781
ACGTGTA0.770.0682