cis; CACGTGG

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
   CACGTGGC  EMBP1TAEM [ref] [ref] [ref]
  CCACGTGG   ABREZMRAB28 [ref] [ref] [ref] [ref] [ref] [ref] [ref]
  MCACGTGGC  GBOXLERBCS [ref] [ref] [ref]
  CCACGTGGCC CPRFPCCHS [ref] [ref]
 GCCACGTGGC  ACGTROOT1 [ref] [ref] [ref]
 GCCACGTGGG  ABREAZMRAB28 [ref] [ref]
 TCCACGTGGC  LREBOXIIPCCHS1 [ref]
 ACCACGTGGC  GBOXPC [ref]
 TCCACGTGGT  GBOXSORBCS1 [ref]
GGACACGTGGC  ABRETAEM [ref] [ref] [ref]
TGACACGTGGCA HY5AT [ref] [ref] [ref]
   YACGTGGC  ABREATCONSENSUS [ref] [ref] [ref] [ref]
  RYACGTGGYR ABREATRD22 [ref] [ref]
   CACGTG    CACGTGMOTIF [ref] [ref] [ref] [ref] [ref] [ref] [ref]
    ACGTG    ABRELATERD1 [ref]
    ACGT     ACGTATERD1 [ref]

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of CACGTGG

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of CACGTGG.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.66At4g27410no apical meristem (NAM) family protein (RD26) ((RD26)) NAC
0.60At1g52890no apical meristem (NAM) family protein NAC
0.59At2g46680homeobox-leucine zipper protein 7 (HB-7) / HD-ZIP transcription factor 7 ((ATHB-7)) Homeobox
0.58At5g12840CCAAT-binding transcription factor (CBF-B/NF-YA) family protein ((HAP2A)) CCAAT-HAP2
0.58At1g77450no apical meristem (NAM) family protein NAC
0.58At2g46270G-box binding factor 3 (GBF3) ((GBF3)) bZIP
0.57At3g61890homeobox-leucine zipper protein 12 (HB-12) / HD-ZIP transcription factor 12 ((ATHB-12)) Homeobox
0.54At4g21440myb family transcription factor (MYB102) MYB
0.52At3g19580zinc finger (C2H2 type) protein 2 (AZF2) ((AZF2)) C2H2
0.52At1g01720no apical meristem (NAM) family protein ((ATAF1)) NAC
0.52At3g19290ABA-responsive element-binding protein 2 (AREB2) ((ABF4, AREB2)) bZIP
0.51At4g34000ABA-responsive element-binding protein / abscisic acid responsive elements-binding factor (ABRE) / ABA-responsive elements-binding factor (ABF3) ((ABF3, DPBF5)) bZIP
0.50At5g04340zinc finger (C2H2 type) family protein ((C2H2)) C2H2
0.49At4g36900AP2 domain-containing protein RAP2.10 (RAP2.10) AP2-EREBP
0.48At1g54830CCAAT-box binding transcription factor Hap5a, putative CCAAT-HAP5

link to other 304 cis elements in ATTED

similar seq.
←CACGTGG→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; CCACGTG
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
CACGTGG1.000.09112
ACACGTG0.920.1162
ACGTGGC0.920.09104
CGTGGCA0.910.08110
GACACGT0.890.0976
ACGTGTC0.880.1184
CGTGTCA0.860.0889
TACACGT0.860.09112
CACGTGT0.840.1292
CCACGTG0.830.0872