cis; CGACGCG

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
CGACG   CGACGOSAMY3 [ref]

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of CGACGCG

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of CGACGCG.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.73At4g17230scarecrow-like transcription factor 13 (SCL13) GRAS
0.72At1g80840WRKY family transcription factor ((WRKY40)) WRKY
0.70At1g28370ERF domain protein 11 (ERF11) AP2-EREBP
0.69At4g31800WRKY family transcription factor ((WRKY18)) WRKY
0.68At3g49530no apical meristem (NAM) family protein NAC
0.65At1g22510zinc finger (C3HC4-type RING finger) family protein C3H
0.65At3g15210ethylene-responsive element-binding factor 4 (ERF4) ((ATERF4, RAP2.5)) AP2-EREBP
0.64At3g50260AP2 domain-containing transcription factor, putative AP2-EREBP
0.64At5g66070zinc finger (C3HC4-type RING finger) family protein C3H
0.64At5g49520WRKY family transcription factor ((WRKY48)) WRKY
0.63At1g27730zinc finger (C2H2 type) family protein (ZAT10) / salt-tolerance zinc finger protein (STZ) ((ZAT10)) C2H2
0.63At5g24590turnip crinkle virus-interacting protein / TCV-interacting protein (TIP) ((TIP)) NAC
0.63At2g38470WRKY family transcription factor ((WRKY33)) WRKY
0.62At3g23250myb family transcription factor (MYB15) MYB
0.62At2g23320WRKY family transcription factor ((WRKY15)) WRKY

link to other 304 cis elements in ATTED

similar seq.
←CGACGCG→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; CGCGTCG
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
CGACGCG1.000.06101
GACGCGT0.900.0622
ACGCGTT0.890.1096
CGCGTTT0.880.1193
ACCGCGT0.880.1098
CCGCGTT0.880.1017
ACGCGGT0.870.09141
AACCGCG0.860.0985
ACGCGTA0.860.1074
CGCGGTT0.860.0716