cis; TGTCGAC

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
 GTCGAC CDTDREHVCBF2 [ref]

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of TGTCGAC

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of TGTCGAC.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.50At1g76580SPL1-Related3 protein (SPL1R3) SBP
0.41At3g01560proline-rich family protein Trihelix
0.41At1g43160AP2 domain-containing protein RAP2.6 (RAP2.6) AP2-EREBP
0.41At4g32800AP2 domain-containing transcription factor TINY, putative AP2-EREBP

link to other 304 cis elements in ATTED

similar seq.
←TGTCGAC→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; GTCGACA
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
TGTCGAC1.000.08160
GTCGACA0.890.08171
ACCGTGT0.730.07144
TGCCGAC0.720.0830
CCGACAT0.710.0788
GCCGACA0.690.08121
CACACGT0.670.0670
ACTTCCT0.660.0696
CCGTGTT0.660.08145
ACGCGTA0.650.1074