cis; TGCCGAC


Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
 RCCGAC DRECRTCOREAT [ref] [ref] [ref] [ref] [ref]
  CCGAC LTRECOREATCOR15 [ref] [ref] [ref] [ref]

CEG profile for position preference


CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of TGCCGAC

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GO IDterm-Log(p)number of
{A; genes in a GO}
numver of
{B; genes with this heptamer}
{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of TGCCGAC.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.59At2g46830myb-related transcription factor (CCA1) ((CCA1)) MYB-related
0.55At5g57660zinc finger (B-box type) family protein C2C2-CO-like
0.52At5g62430Dof-type zinc finger domain-containing protein C2C2-Dof
0.52At5g15850zinc finger protein CONSTANS-LIKE 1 (COL1) ((COL1)) C2C2-CO-like
0.52At5g67300myb family transcription factor MYB
0.51At1g69570Dof-type zinc finger domain-containing protein C2C2-Dof
0.51At3g01560proline-rich family protein Trihelix
0.51At3g47500Dof-type zinc finger domain-containing protein C2C2-Dof
0.49At5g60850Dof-type zinc finger domain-containing protein ((OBP4)) C2C2-Dof
0.49At3g59060basic helix-loop-helix (bHLH) family protein ((PIL6)) BHLH
0.49At4g37790homeobox-leucine zipper protein 22 (HAT22) / HD-ZIP protein 22 ((HAT22)) Homeobox
0.49At4g32800AP2 domain-containing transcription factor TINY, putative AP2-EREBP
0.49At1g50600scarecrow-like transcription factor 5 (SCL5) GRAS
0.48At3g61890homeobox-leucine zipper protein 12 (HB-12) / HD-ZIP transcription factor 12 ((ATHB-12)) Homeobox
0.48At3g52800zinc finger (AN1-like) family protein C2H2

link to other 304 cis elements in ATTED

similar seq.
TGCCGAC
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; GTCGGCA
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
TGCCGAC1.000.0830
CACCGAC0.810.07198
ATGTCGG0.810.07111
CCGACAT0.800.0788
GTCGGTC0.800.07175
GCCGACA0.780.08121
CCGACCT0.750.0786
CACGCGT0.730.0774
AACACGT0.720.0794
TACGTGT0.720.0698