cis; CACCGAC


Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
 ACCGAC DRE2COREZMRAB17 [ref] [ref] [ref]
 RCCGAC DRECRTCOREAT [ref] [ref] [ref] [ref] [ref]
  CCGAC LTRECOREATCOR15 [ref] [ref] [ref] [ref]

CEG profile for position preference


CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of CACCGAC

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GO IDterm-Log(p)number of
{A; genes in a GO}
numver of
{B; genes with this heptamer}
{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of CACCGAC.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.53At5g01380expressed protein Trihelix
0.52At2g23340AP2 domain-containing transcription factor, putative AP2-EREBP
0.52At4g27410no apical meristem (NAM) family protein (RD26) ((RD26)) NAC
0.49At1g76580SPL1-Related3 protein (SPL1R3) SBP
0.49At5g03720heat shock transcription factor family protein ((AT-HSFA3)) HSF
0.48At4g36900AP2 domain-containing protein RAP2.10 (RAP2.10) AP2-EREBP
0.48At1g43160AP2 domain-containing protein RAP2.6 (RAP2.6) AP2-EREBP
0.48At1g77450no apical meristem (NAM) family protein NAC
0.47At1g01720no apical meristem (NAM) family protein ((ATAF1)) NAC
0.47At4g05100myb family transcription factor (MYB74) MYB
0.47At5g04340zinc finger (C2H2 type) family protein ((C2H2)) C2H2
0.45At1g64380AP2 domain-containing transcription factor, putative AP2-EREBP
0.45At2g38250DNA-binding protein-related Trihelix
0.43At3g15210ethylene-responsive element-binding factor 4 (ERF4) ((ATERF4, RAP2.5)) AP2-EREBP
0.42At3g22830heat shock transcription factor family protein ((AT-HSFA6B)) HSF

link to other 304 cis elements in ATTED

similar seq.
CACCGAC
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; GTCGGTG
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
CACCGAC1.000.07198
TGCCGAC0.810.0830
GTCGGTC0.780.07175
CACGCGT0.750.0774
GCCGACA0.710.08121
ATGTCGG0.710.07111
TACGTGT0.700.0698
CCGACCT0.700.0786
CCGACAT0.700.0788
AACACGT0.690.0794