cis; CCGACAT


Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
TACCGACAT DREDR1ATRD29AB [ref] [ref] [ref] [ref] [ref] [ref] [ref]
  CCGAC   LTRECOREATCOR15 [ref] [ref] [ref] [ref]

CEG profile for position preference


CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of CCGACAT

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GO IDterm-Log(p)number of
{A; genes in a GO}
numver of
{B; genes with this heptamer}
{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of CCGACAT.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.59At4g17230scarecrow-like transcription factor 13 (SCL13) GRAS
0.57At5g04340zinc finger (C2H2 type) family protein ((C2H2)) C2H2
0.56At3g50260AP2 domain-containing transcription factor, putative AP2-EREBP
0.55At1g19310zinc finger (C3HC4-type RING finger) family protein C3H
0.55At4g27410no apical meristem (NAM) family protein (RD26) ((RD26)) NAC
0.54At1g76580SPL1-Related3 protein (SPL1R3) SBP
0.53At5g66070zinc finger (C3HC4-type RING finger) family protein C3H
0.52At1g43160AP2 domain-containing protein RAP2.6 (RAP2.6) AP2-EREBP
0.52At4g36900AP2 domain-containing protein RAP2.10 (RAP2.10) AP2-EREBP
0.51At1g08900sugar transporter-related C2H2
0.51At5g63790no apical meristem (NAM) family protein NAC
0.51At5g03720heat shock transcription factor family protein ((AT-HSFA3)) HSF
0.50At3g15210ethylene-responsive element-binding factor 4 (ERF4) ((ATERF4, RAP2.5)) AP2-EREBP
0.50At2g30250WRKY family transcription factor ((WRKY25)) WRKY
0.49At5g01380expressed protein Trihelix

link to other 304 cis elements in ATTED

similar seq.
CCGACAT
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; ATGTCGG
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
CCGACAT1.000.0788
GCCGACA0.860.08121
TGCCGAC0.800.0830
ATGTCGG0.790.07111
GTCGGTC0.760.07175
ACCGTGT0.750.07144
CCGTGTT0.710.08145
TGTCGAC0.710.08160
GTCGGTA0.710.06189
CACCGAC0.700.07198