cis; GCCGACA

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
RCCGAC  DRECRTCOREAT [ref] [ref] [ref] [ref] [ref]
 CCGAC  LTRECOREATCOR15 [ref] [ref] [ref] [ref]

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of GCCGACA

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of GCCGACA.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.58At4g17230scarecrow-like transcription factor 13 (SCL13) GRAS
0.57At5g63790no apical meristem (NAM) family protein NAC
0.55At5g04340zinc finger (C2H2 type) family protein ((C2H2)) C2H2
0.55At4g18880heat shock transcription factor 21 (HSF21) ((AT-HSFA4A)) HSF
0.54At1g67970heat shock factor protein, putative (HSF5) / heat shock transcription factor, putative (HSTF5) ((AT-HSFA8)) HSF
0.52At3g15210ethylene-responsive element-binding factor 4 (ERF4) ((ATERF4, RAP2.5)) AP2-EREBP
0.52At3g50260AP2 domain-containing transcription factor, putative AP2-EREBP
0.51At2g38470WRKY family transcription factor ((WRKY33)) WRKY
0.50At1g42990bZIP transcription factor family protein bZIP
0.50At1g27730zinc finger (C2H2 type) family protein (ZAT10) / salt-tolerance zinc finger protein (STZ) ((ZAT10)) C2H2
0.50At2g30250WRKY family transcription factor ((WRKY25)) WRKY
0.50At1g80840WRKY family transcription factor ((WRKY40)) WRKY
0.48At1g77450no apical meristem (NAM) family protein NAC
0.47At1g76580SPL1-Related3 protein (SPL1R3) SBP
0.47At5g66070zinc finger (C3HC4-type RING finger) family protein C3H

link to other 304 cis elements in ATTED

similar seq.
←GCCGACA→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; TGTCGGC
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
GCCGACA1.000.08121
CCGACAT0.860.0788
GTCGGTC0.790.07175
ATGTCGG0.790.07111
TGCCGAC0.780.0830
ACCGTGT0.720.07144
CACCGAC0.710.07198
CCGTGTT0.710.08145
TGTCGAC0.690.08160
GTCGGTA0.690.06189