cis; ACCGACA


Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
 ACCGACA  LTREATLTI78 [ref]
TACCGACAT DREDR1ATRD29AB [ref] [ref] [ref] [ref] [ref] [ref] [ref]
 ACCGAC   DRE2COREZMRAB17 [ref] [ref] [ref]
 RCCGAC   DRECRTCOREAT [ref] [ref] [ref] [ref] [ref]
  CCGAC   LTRECOREATCOR15 [ref] [ref] [ref] [ref]

CEG profile for position preference


CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of ACCGACA

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GO IDterm-Log(p)number of
{A; genes in a GO}
numver of
{B; genes with this heptamer}
{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of ACCGACA.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.54At2g23340AP2 domain-containing transcription factor, putative AP2-EREBP
0.53At1g76580SPL1-Related3 protein (SPL1R3) SBP
0.49At2g47890zinc finger (B-box type) family protein C2C2-CO-like
0.48At1g08900sugar transporter-related C2H2
0.47At1g19310zinc finger (C3HC4-type RING finger) family protein C3H
0.47At5g03720heat shock transcription factor family protein ((AT-HSFA3)) HSF
0.46At4g17230scarecrow-like transcription factor 13 (SCL13) GRAS
0.45At4g36900AP2 domain-containing protein RAP2.10 (RAP2.10) AP2-EREBP
0.44At3g01560proline-rich family protein Trihelix
0.44At4g32800AP2 domain-containing transcription factor TINY, putative AP2-EREBP
0.42At1g64380AP2 domain-containing transcription factor, putative AP2-EREBP
0.42At2g37580zinc finger (C3HC4-type RING finger) family protein C3H
0.42At4g27410no apical meristem (NAM) family protein (RD26) ((RD26)) NAC
0.42At1g78600zinc finger (B-box type) family protein C2C2-CO-like
0.42At5g01380expressed protein Trihelix

link to other 304 cis elements in ATTED

similar seq.
ACCGACA
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; TGTCGGT
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
ACCGACA1.000.0781
CACCGAC0.660.07198
TGTCGGC0.640.06163
ACCGTGT0.630.07144
TGCCGAC0.610.0830
ACGCGTA0.600.1074