cis; CACGCGT

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
no correspondence

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of CACGCGT

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of CACGCGT.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.68At3g15210ethylene-responsive element-binding factor 4 (ERF4) ((ATERF4, RAP2.5)) AP2-EREBP
0.67At4g17230scarecrow-like transcription factor 13 (SCL13) GRAS
0.66At5g24590turnip crinkle virus-interacting protein / TCV-interacting protein (TIP) ((TIP)) NAC
0.64At3g49530no apical meristem (NAM) family protein NAC
0.61At4g27410no apical meristem (NAM) family protein (RD26) ((RD26)) NAC
0.60At5g04340zinc finger (C2H2 type) family protein ((C2H2)) C2H2
0.59At1g28370ERF domain protein 11 (ERF11) AP2-EREBP
0.59At1g01720no apical meristem (NAM) family protein ((ATAF1)) NAC
0.59At5g49520WRKY family transcription factor ((WRKY48)) WRKY
0.58At5g01380expressed protein Trihelix
0.58At1g80840WRKY family transcription factor ((WRKY40)) WRKY
0.58At3g23250myb family transcription factor (MYB15) MYB
0.58At3g19580zinc finger (C2H2 type) protein 2 (AZF2) ((AZF2)) C2H2
0.57At5g48655zinc finger (C3HC4-type RING finger) family protein C3H
0.57At5g67300myb family transcription factor MYB

link to other 304 cis elements in ATTED

similar seq.
←CACGCGT→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; ACGCGTG
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
CACGCGT1.000.0774
CACGCGG0.810.0740
CGCGTCA0.780.07193
GTCGGTC0.770.07175
CCGACCT0.770.0786
ACGCGTC0.760.0790
CACCGAC0.750.07198
AACACGT0.740.0794
TGCCGAC0.730.0830
TACGTGT0.730.0698