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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106391896   scarecrow-like protein 22 
 ath-u.5   HAM1   GRAS family transcription factor 
 ath-u.5   HAM2   GRAS family transcription factor 
 ath-u.5   HAM3   GRAS family transcription factor 
 gma-u.5   100792973   scarecrow-like protein 27 
 gma-u.5   100801785   scarecrow-like protein 6 
 gma-u.5   100805945   scarecrow-like protein 6 
 vvi-u.5   100252271   scarecrow-like protein 22 
 vvi-u.5   100267664   scarecrow-like protein 27 
 ppo-u.5   7480613   scarecrow-like protein 6 
 ppo-u.5   18105185   scarecrow-like protein 6 
 ppo-u.5   18105187   scarecrow-like protein 6 
 mtr-u.5   25480239   scarecrow-like protein 6 
 mtr-u.5   120575826   scarecrow-like protein 6 
 mtr-u.5   25491659   scarecrow-like protein 6 
 sly-u.5   GRAS24   GRAS family protein 
 sly-u.5   HAM   GRAS transcriptional regulator HAM 
 osa-u.5   107275984   scarecrow-like protein 6 
 osa-u.5   4330230   scarecrow-like protein 6 
 zma-u.5   100279263   uncharacterized LOC100279263 
 zma-u.5   100279420   uncharacterized LOC100279420 
 zma-u.5   100381701   uncharacterized LOC100381701 

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Top 50 coexpressed genes to 106391896 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106391896 (bna-r.1 coexpression data)

CoexMap"106391896"


bnaLOC106391896 | Entrez gene ID : 106391896    
Species bna ath gma vvi ppo mtr sly osa zma bdi hvu bra cit sbi ghi sot nta cre tae
Paralog 1 3 3 2 3 3 2 2 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (5322 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0043565 [list] [network] sequence-specific DNA binding  (2444 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (3791 genes)  IEA  
Protein XP_013688082.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto 1,  pero 1,  cyto_pero 1  (predict for XP_013688082.1)
Subcellular
localization
TargetP
other 6,  chlo 4  (predict for XP_013688082.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106391896
ath-u.5
for
HAM1
ath-u.5
for
HAM2
ath-u.5
for
HAM3
gma-u.5
for
100792973
gma-u.5
for
100801785
gma-u.5
for
100805945
vvi-u.5
for
100252271
vvi-u.5
for
100267664
ppo-u.5
for
7480613
ppo-u.5
for
18105185
ppo-u.5
for
18105187
mtr-u.5
for
25480239
mtr-u.5
for
120575826
mtr-u.5
for
25491659
sly-u.5
for
GRAS24
sly-u.5
for
HAM
osa-u.5
for
107275984
osa-u.5
for
4330230
zma-u.5
for
100279263
zma-u.5
for
100279420
zma-u.5
for
100381701


Ortholog ID: 1014
Species bna bna bra bra ath ath ghi ghi cit cit gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta osa zma zma tae tae hvu hvu sbi sbi bdi bdi
Symbol LOC106353214 LOC106391896 LOC103836942 LOC103862870 HAM3 HAM2 LOC107945536 LOC107945538 LOC102610953 LOC102611258 LOC100805945 LOC100792973 LOC100252271 LOC100267664 LOC7480613 LOC7465515 LOC25480239 LOC120575826 HAM GRAS24 LOC102602862 LOC102606202 LOC107763536 LOC107763537 LOC4331304 LOC100381701 LOC100274201 LOC123106077 LOC123181605 LOC123406350 LOC123412246 LOC8067884 LOC8058755 LOC100828697 LOC100834684
Function* scarecrow-like protein 27 scarecrow-like protein 22 scarecrow-like protein 6 scarecrow-like protein 22 GRAS family transcription factor GRAS family transcription factor scarecrow-like protein 6 scarecrow-like protein 6 scarecrow-like protein 6 scarecrow-like protein 27 scarecrow-like protein 6 scarecrow-like protein 27 scarecrow-like protein 22 scarecrow-like protein 27 scarecrow-like protein 6 scarecrow-like protein 27 scarecrow-like protein 6 scarecrow-like protein 6 GRAS transcriptional regulator HAM GRAS family protein scarecrow-like protein 22 scarecrow-like protein 22 scarecrow-like protein 6 scarecrow-like protein 6 scarecrow-like protein 27 uncharacterized LOC100381701 Scarecrow-like protein 6 scarecrow-like protein 6 scarecrow-like protein 6 scarecrow-like protein 6 scarecrow-like protein 22 scarecrow-like protein 6 scarecrow-like protein 6 scarecrow-like protein 27 scarecrow-like protein 6
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna04382 Cornified envelope formation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna04382 Cornified envelope formation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00904 Diterpenoid biosynthesis 2
bra04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma02010 ABC transporters 2
gma00790 Folate biosynthesis 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 3
vvi03018 RNA degradation 2
vvi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04016 MAPK signaling pathway - plant 2
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00270 Cysteine and methionine metabolism 3
zma00999 Biosynthesis of various plant secondary metabolites 3
zma02010 ABC transporters 3
zma04981 Folate transport and metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00650 Butanoate metabolism 2
hvu00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106353214 106391896 103836942 103862870 828208 825234 107945536 107945538 102610953 102611258 100805945 100792973 100252271 100267664 7480613 7465515 25480239 120575826 101252614 104648977 102602862 102606202 107763536 107763537 4331304 100381701 100274201 123106077 123181605 123406350 123412246 8067884 8058755 100828697 100834684
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