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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106434117   pentatricopeptide repeat-containing protein At2g29760, chloroplastic 
 bna-r.1   125594735   pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like 
 bna-r.1   125602932   pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like 
 bna-r.1   106396637   pentatricopeptide repeat-containing protein At2g29760, chloroplastic 
 bra-r.6   103868004   pentatricopeptide repeat-containing protein At2g29760, chloroplastic 
 ath-u.5   OTP81   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ghi-r.1   107959183   pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like 
 ghi-r.1   107906613   pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like 
 cit-r.1   102623637   pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like 
 cit-r.1   102631065   pentatricopeptide repeat-containing protein At2g29760, chloroplastic 
 gma-u.5   100795459   pentatricopeptide repeat-containing protein At2g29760, chloroplastic 
 vvi-u.5   100263911   pentatricopeptide repeat-containing protein At2g29760, chloroplastic 
 vvi-u.5   100262644   pentatricopeptide repeat-containing protein At2g29760, chloroplastic 
 ppo-u.5   18107640   pentatricopeptide repeat-containing protein At1g08070, chloroplastic 
 ppo-u.5   7468568   pentatricopeptide repeat-containing protein At2g29760, chloroplastic 
 sly-u.5   101257180   pentatricopeptide repeat-containing protein At2g29760, chloroplastic 
 sot-r.1   102587393   pentatricopeptide repeat-containing protein At2g29760, chloroplastic 
 nta-r.1   107787434   pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like 
 nta-r.1   107794088   pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like 
 tae-r.2   123045769   pentatricopeptide repeat-containing protein At1g08070, chloroplastic 
 bdi-r.1   100839670   pentatricopeptide repeat-containing protein At5g48910 

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Top 50 coexpressed genes to 106434117 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106434117 (bna-r.1 coexpression data)

CoexMap"106434117"


bnaLOC106434117 | Entrez gene ID : 106434117    
Species bna bra ath ghi cit gma vvi ppo sly sot nta tae bdi osa zma mtr sbi hvu cre
Paralog 4 1 1 2 2 1 2 2 1 1 2 1 1 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (870 genes)  IEA  
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (3493 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (3852 genes)  IEA  
GO:0005515 [list] [network] protein binding  (12789 genes)  IEA  
Protein XP_013730403.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 1,  cyto 1,  mito 1,  cysk 1,  nucl_plas 1  (predict for XP_013730403.2)
Subcellular
localization
TargetP
chlo 7  (predict for XP_013730403.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106434117
bna-r.1
for
125594735
bna-r.1
for
125602932
bna-r.1
for
106396637
bra-r.6
for
103868004
ath-u.5
for
OTP81
ghi-r.1
for
107959183
ghi-r.1
for
107906613
cit-r.1
for
102623637
cit-r.1
for
102631065
gma-u.5
for
100795459
vvi-u.5
for
100263911
vvi-u.5
for
100262644
ppo-u.5
for
18107640
ppo-u.5
for
7468568
sly-u.5
for
101257180
sot-r.1
for
102587393
nta-r.1
for
107787434
nta-r.1
for
107794088
tae-r.2
for
123045769
bdi-r.1
for
100839670


Ortholog ID: 11253
Species bna bna bna bra ath ghi ghi cit cit gma vvi vvi ppo ppo sly sot nta nta tae bdi
Symbol LOC106434117 LOC125594735 LOC125602932 LOC103868004 OTP81 LOC107959183 LOC107906613 LOC102623637 LOC102631065 LOC100795459 LOC100263911 LOC100262644 LOC18107640 LOC7468568 LOC101257180 LOC102587393 LOC107787434 LOC107794088 LOC123045769 LOC100839670
Function* pentatricopeptide repeat-containing protein At2g29760, chloroplastic pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like pentatricopeptide repeat-containing protein At2g29760, chloroplastic Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like pentatricopeptide repeat-containing protein At2g29760, chloroplastic pentatricopeptide repeat-containing protein At2g29760, chloroplastic pentatricopeptide repeat-containing protein At2g29760, chloroplastic pentatricopeptide repeat-containing protein At2g29760, chloroplastic pentatricopeptide repeat-containing protein At1g08070, chloroplastic pentatricopeptide repeat-containing protein At2g29760, chloroplastic pentatricopeptide repeat-containing protein At2g29760, chloroplastic pentatricopeptide repeat-containing protein At2g29760, chloroplastic pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like pentatricopeptide repeat-containing protein At1g08070, chloroplastic pentatricopeptide repeat-containing protein At5g48910
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03060 Protein export 2
ppo01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
nta04626 Plant-pathogen interaction 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
nta04626 Plant-pathogen interaction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106434117 125594735 125602932 103868004 817526 107959183 107906613 102623637 102631065 100795459 100263911 100262644 18107640 7468568 101257180 102587393 107787434 107794088 123045769 100839670
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