cis; CACGTAC

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
GCCACGTACA ABRE3HVA22 [ref] [ref] [ref]
TCCACGTACT O2F3BE2S1 [ref]
   ACGT    ACGTATERD1 [ref]
     GTAC  CURECORECR [ref] [ref] [ref] [ref]

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of CACGTAC

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of CACGTAC.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.60At4g27410no apical meristem (NAM) family protein (RD26) ((RD26)) NAC
0.59At5g67300myb family transcription factor MYB
0.50At4g17230scarecrow-like transcription factor 13 (SCL13) GRAS
0.50At5g62470myb family transcription factor (MYB96) ((MYB96)) MYB
0.49At4g37260myb family transcription factor (MYB73) MYB
0.49At3g62420bZIP transcription factor family protein bZIP
0.48At1g64380AP2 domain-containing transcription factor, putative AP2-EREBP
0.47At1g08320bZIP family transcription factor bZIP
0.47At2g38250DNA-binding protein-related Trihelix
0.47At3g52800zinc finger (AN1-like) family protein C2H2
0.46At3g15210ethylene-responsive element-binding factor 4 (ERF4) ((ATERF4, RAP2.5)) AP2-EREBP
0.46At1g27730zinc finger (C2H2 type) family protein (ZAT10) / salt-tolerance zinc finger protein (STZ) ((ZAT10)) C2H2
-0.46At4g3093050S ribosomal protein L21, mitochondrial (RPL21M) ((WRKY32)) WRKY
0.45At1g80840WRKY family transcription factor ((WRKY40)) WRKY
0.45At4g37790homeobox-leucine zipper protein 22 (HAT22) / HD-ZIP protein 22 ((HAT22)) Homeobox

link to other 304 cis elements in ATTED

similar seq.
←CACGTAC→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; GTACGTG
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
CACGTAC1.000.06191
TACACGT0.760.09112
ACACGTG0.740.1162
AGACACG0.720.07112
ACGTGTC0.720.1184
GACACGT0.710.0976
CGTGGCA0.710.08110
ACGTGTA0.700.0682
CACGTGG0.700.09112
CGTGTCA0.700.0889