cis; ATATATA

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
AAKAATWYRTAWATAAAAMTTTTATWTA COREOS [ref]

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of ATATATA

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of ATATATA.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.72At3g52800zinc finger (AN1-like) family protein C2H2
0.70At1g80840WRKY family transcription factor ((WRKY40)) WRKY
0.70At1g27730zinc finger (C2H2 type) family protein (ZAT10) / salt-tolerance zinc finger protein (STZ) ((ZAT10)) C2H2
0.68At1g28370ERF domain protein 11 (ERF11) AP2-EREBP
0.68At5g67300myb family transcription factor MYB
0.67At5g49520WRKY family transcription factor ((WRKY48)) WRKY
0.66At5g59820zinc finger (C2H2 type) family protein (ZAT12) ((RHL41)) C2H2
0.66At3g15210ethylene-responsive element-binding factor 4 (ERF4) ((ATERF4, RAP2.5)) AP2-EREBP
0.66At3g49530no apical meristem (NAM) family protein NAC
0.65At3g19580zinc finger (C2H2 type) protein 2 (AZF2) ((AZF2)) C2H2
0.65At4g17500ethylene-responsive element-binding protein 1 (ERF1) / EREBP-2 protein ((ATERF-1)) AP2-EREBP
0.65At5g66070zinc finger (C3HC4-type RING finger) family protein C3H
0.64At5g04340zinc finger (C2H2 type) family protein ((C2H2)) C2H2
0.64At4g17490ethylene-responsive element-binding protein, putative ((ATERF6, ERF-6-6)) AP2-EREBP
0.64At5g47230ethylene-responsive element-binding factor 5 (ERF5) ((ATERF5)) AP2-EREBP

link to other 304 cis elements in ATTED

similar seq.
←ATATATA→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; TATATAT
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
ATATATA1.000.1026
TATATAT0.990.1026
TATATAA0.940.111
CTATATA0.930.144
ATATAAA0.930.092
TATAAAT0.920.1018
TCTATAT0.910.111
TCCTATA0.900.0655
TATAAAC0.880.0814
CTATAAA0.880.1063