cis; CGGATAA


Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
CGGATA  REBETALGLHCB21 [ref]
 GGATA  MYBST1 [ref]
  GATAA IBOXCORE
  GATA  GATABOX [ref] [ref] [ref] [ref] [ref]

CEG profile for position preference


CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of CGGATAA

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GO IDterm-Log(p)number of
{A; genes in a GO}
numver of
{B; genes with this heptamer}
{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of CGGATAA.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.53At3g50700zinc finger (C2H2 type) family protein C2H2
0.53At2g03340WRKY family transcription factor ((WRKY3)) WRKY
0.53At5g18680F-box family protein / tubby family protein TUB
0.50At5g41920scarecrow transcription factor family protein GRAS
0.47At2g04890scarecrow-like transcription factor 21 (SCL21) ((SCL21)) GRAS
0.47At5g63470CCAAT-box binding transcription factor Hap5a, putative CCAAT-HAP5
0.47At5g61590AP2 domain-containing transcription factor family protein AP2-EREBP
0.47At3g06380F-box family protein / tubby family protein TUB
0.46At5g11060homeobox protein knotted-1 like 4 (KNAT4) ((KNAT4)) Homeobox
0.46At4g14540CCAAT-box binding transcription factor subunit B (NF-YB) (HAP3 ) (AHAP3) family CCAAT-HAP3
0.46At4g13640myb family transcription factor G2-like
0.45At5g63780zinc finger (C3HC4-type RING finger) family protein C3H
0.45At2g21240expressed protein BBR%2FBPC
0.43At5g16820heat shock factor protein 3 (HSF3) / heat shock transcription factor 3 (HSTF3) ((HSF3)) HSF
0.43At2g02070zinc finger (C2H2 type) family protein C2H2

link to other 304 cis elements in ATTED

similar seq.
CGGATAA
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; TTATCCG
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
CGGATAA1.000.0638
CTTATCC0.910.1153
GATAAGA0.890.0742
TTATCCA0.880.1054
CCTTATC0.880.1017
TCTTATC0.870.0923
GGATAAG0.870.0689
CTTATCT0.870.0821
AGATAAG0.860.0838
GATAAGG0.860.0739