cis; CTCTCTT

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
  CTCTT NODCON2GM [ref] [ref]
  CTCTT OSE2ROOTNODULE [ref] [ref]

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of CTCTCTT

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of CTCTCTT.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.59At5g24590turnip crinkle virus-interacting protein / TCV-interacting protein (TIP) ((TIP)) NAC
0.54At3g49530no apical meristem (NAM) family protein NAC
0.52At3g15210ethylene-responsive element-binding factor 4 (ERF4) ((ATERF4, RAP2.5)) AP2-EREBP
-0.52At5g61420myb family transcription factor (MYB28) ((MYB28)) MYB
0.51At5g66070zinc finger (C3HC4-type RING finger) family protein C3H
0.51At5g49520WRKY family transcription factor ((WRKY48)) WRKY
0.50At5g48655zinc finger (C3HC4-type RING finger) family protein C3H
0.50At3g50060myb family transcription factor MYB
0.48At1g22810AP2 domain-containing transcription factor, putative AP2-EREBP
0.48At2g44840ethylene-responsive element-binding protein, putative AP2-EREBP
0.48At4g17490ethylene-responsive element-binding protein, putative ((ATERF6, ERF-6-6)) AP2-EREBP
0.48At1g28370ERF domain protein 11 (ERF11) AP2-EREBP
0.47At4g31550WRKY family transcription factor ((WRKY11)) WRKY
0.46At4g17230scarecrow-like transcription factor 13 (SCL13) GRAS
0.46At3g62420bZIP transcription factor family protein bZIP

link to other 304 cis elements in ATTED

similar seq.
←CTCTCTT→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; AAGAGAG
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
CTCTCTT1.000.0717
CCTCTCT0.810.0657
TCTCTCT0.790.0746
CTCTCTC0.710.0674
TCTTTCC0.710.0638
CTTTCCT0.680.0647
TTCCTCT0.660.0695
AGCTGTT0.640.07127
TTCACAC0.640.0666
ACGCGGA0.640.07116