cis; GCCACGT


Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
 GCCACGTGGC  ACGTROOT1 [ref] [ref] [ref]
 GCCACGTACA  ABRE3HVA22 [ref] [ref] [ref]
 GCCACGTGGG  ABREAZMRAB28 [ref] [ref]
 GCCACGTGCC  GBOX10NT
CGCCACGTGTCC ABREBNNAPA [ref] [ref] [ref]
 GCCAC       SORLIP1AT [ref] [ref]
    ACGT     ACGTATERD1 [ref]

CEG profile for position preference


CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of GCCACGT

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GO IDterm-Log(p)number of
{A; genes in a GO}
numver of
{B; genes with this heptamer}
{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of GCCACGT.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.51At5g24930zinc finger (B-box type) family protein C2C2-CO-like
0.50At5g60850Dof-type zinc finger domain-containing protein ((OBP4)) C2C2-Dof
0.49At3g59060basic helix-loop-helix (bHLH) family protein ((PIL6)) BHLH
0.46At5g20220zinc knuckle (CCHC-type) family protein C2H2
0.45At1g19000myb family transcription factor MYB-related
-0.44At3g16870zinc finger (GATA type) family protein C2C2-Gata
-0.44At5g15150homeobox-leucine zipper protein 7 (HAT7) / HD-ZIP protein 7 / HD-ZIP protein (HB-3) ((ATHB-3, HAT7)) Homeobox
0.44At2g43010phytochrome-interacting factor 4 (PIF4) / basic helix-loop-helix protein 9 (bHLH9) / short under red-light 2 (SRL2) ((PIF4)) BHLH
0.43At4g14540CCAAT-box binding transcription factor subunit B (NF-YB) (HAP3 ) (AHAP3) family CCAAT-HAP3
0.42At5g57660zinc finger (B-box type) family protein C2C2-CO-like
0.41At5g62430Dof-type zinc finger domain-containing protein C2C2-Dof
0.41At4g27410no apical meristem (NAM) family protein (RD26) ((RD26)) NAC
-0.40At3g14740PHD finger family protein C2H2
0.40At3g13040myb family transcription factor G2-like

link to other 304 cis elements in ATTED

similar seq.
GCCACGT
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; ACGTGGC
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
GCCACGT1.000.0870
CCACGTG0.940.0872
ACGTGGC0.830.09104
CACGTGG0.790.09112
ACACGTG0.760.1162
CGTGTCA0.750.0889
GACACGT0.750.0976
CGTGGCA0.750.08110
CCACACA0.730.0753
TTATCCA0.730.1054