GO:0009451 RNA modification
| 230 ath genes in this database. |
| 407 gma genes in this database. |
| 280 sly genes in this database. |
| 252 osa genes in this database. |
| 350 zma genes in this database. |
| 422 bra genes in this database. |
| 500 vvi genes in this database. |
| 384 ppo genes in this database. |
| 432 mtr genes in this database. |
| 1066 tae genes in this database. |
| 393 hvu genes in this database. |
| 557 ghi genes in this database. |
| 870 bna genes in this database. |
| 128 cre genes in this database. |
| 378 sbi genes in this database. |
| 378 sot genes in this database. |
| 369 cit genes in this database. |
| 384 bdi genes in this database. |
| 732 nta genes in this database. |
[QuickGO]
term: RNA modification
goid: GO:0009451
Shaded genes do not have GeneChip data. The output was limited up to 10000.
| Species | Symbol | Gene coexpression |
Locus page |
Full name* | Entrez Gene ID | Evidence* |
|---|---|---|---|---|---|---|
| ath | REME1 |  |
 |
Pentatricopeptide repeat (PPR) superfamily protein | 814914 | IMP |
| ath | SLO2 | |
|
Pentatricopeptide repeat (PPR) superfamily protein | 815845 | |
| ath | AT2G18410 | |
|
elongator complex protein | 816356 | |
| ath | AT2G19870 | |
|
tRNA/rRNA methyltransferase (SpoU) family protein | 816506 | |
| ath | MEF21 | |
|
mitochondrial editing factor 21 | 816576 | IEA |
| ath | AT2G21090 | |
|
Pentatricopeptide repeat (PPR-like) superfamily protein | 816644 | IEA |
| ath | AT2G31580 | |
|
tRNAHis guanylyltransferase | 817716 | |
| ath | AT2G32320 | |
|
tRNAHis guanylyltransferase | 817793 | |
| ath | MORF6 | |
|
plastid developmental protein DAG | 818091 | |
| ath | AT2G37310 | |
|
Pentatricopeptide repeat (PPR) superfamily protein | 818308 | IEA |
| ath | SVR1 | |
|
pseudouridine synthase family protein | 818500 | |
| ath | AT2G39670 | |
|
Radical SAM superfamily protein | 818550 | |
| ath | AT2G40570 | |
|
initiator tRNA phosphoribosyl transferase family protein | 818652 | |
| ath | AT2G41750 | |
DTW domain-containing protein | 818774 | ||
| ath | CRR4 | |
|
Pentatricopeptide repeat (PPR) superfamily protein | 819143 | |
| ath | AT2G45730 | |
|
eukaryotic initiation factor 3 gamma subunit family protein | 819181 | |
| ath | AT2G46050 | |
|
Pentatricopeptide repeat (PPR-like) superfamily protein | 819213 | |
| ath | MEF19 | |
|
mitochondrial editing factor 19 | 819688 | |
| ath | EMB2016 | |
|
embryo defective 2016 | 819736 | |
| ath | MORF3 | |
|
plastid developmental protein DAG | 819864 | |
| ath | AT3G06950 | |
|
Pseudouridine synthase family protein | 819880 | IEA |
| ath | AT3G11460 | |
|
Pentatricopeptide repeat (PPR) superfamily protein | 820319 | |
| ath | AT3G02320 | |
|
N2,N2-dimethylguanosine tRNA methyltransferase | 820451 | |
| ath | MEF22 | |
|
mitochondrial editing factor 22 | 820459 | |
| ath | AT3G13880 | |
|
Tetratricopeptide repeat (TPR)-like superfamily protein | 820601 | |
| ath | AT3G14330 | |
|
Tetratricopeptide repeat (TPR)-like superfamily protein | 820653 | |
| ath | RIP1 | |
|
cobalt ion binding protein | 820729 | IMP |
| ath | AT3G03920 | |
|
H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein | 821062 | |
| ath | AT3G02330 | |
|
Pentatricopeptide repeat (PPR) superfamily protein | 821115 | |
| ath | AT3G18840 | |
|
LOW protein: PPR containing-like protein | 821417 | IEA |
| ath | MEF20 | |
|
mitochondrial editing factor 20 | 821430 | |
| ath | AT3G19630 | |
|
Radical SAM superfamily protein | 821500 | |
| ath | AT3G20930 | |
|
RNA-binding (RRM/RBD/RNP motifs) family protein | 821642 | |
| ath | AT3G22150 | |
|
Tetratricopeptide repeat (TPR)-like superfamily protein | 821779 | |
| ath | AT3G22690 | |
|
LOW protein: PPR containing-like protein | 821840 | IMP |
| ath | GRP4 | |
|
glycine-rich RNA-binding protein 4 | 821966 | |
| ath | TRM11 | |
|
tRNA modification 11 protein | 822245 | |
| ath | MEF14 | |
|
Phosphoglycerate mutase family protein | 822292 | IMP |
| ath | AT3G28460 | |
|
methyltransferase | 822476 | |
| ath | AT3G43340 | |
Pseudouridine synthase family protein | 823413 | ||
| ath | EMB2261 | |
|
Tetratricopeptide repeat (TPR)-like superfamily protein | 824078 | IEA |
| ath | AT3G49740 | |
|
Tetratricopeptide repeat (TPR)-like superfamily protein | 824136 | IEA |
| ath | FIP37 | |
|
FKBP12 interacting protein 37 | 824584 | |
| ath | AT3G56120 | |
|
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | 824778 | |
| ath | AT3G56330 | |
|
N2,N2-dimethylguanosine tRNA methyltransferase | 824800 | |
| ath | AT3G57000 | |
|
nucleolar essential protein-like protein | 824867 | |
| ath | AT3G61170 | |
|
Tetratricopeptide repeat (TPR)-like superfamily protein | 825289 | IEA |
| ath | AT3G63510 | |
|
FMN-linked oxidoreductases superfamily protein | 825526 | |
| ath | AT4G04670 | |
|
Met-10+ like family protein / kelch repeat-containing protein | 825800 | |
| ath | AT4G08210 | |
|
Pentatricopeptide repeat (PPR-like) superfamily protein | 826371 | IEA |
| ath | EMB1691 | |
|
Methyltransferase MT-A70 family protein | 826589 | |
| ath | ELP6 | |
|
elongator protein 6 | 826600 | |
| ath | MTA | |
|
mRNAadenosine methylase | 826670 | |
| ath | AT4G11690 | |
|
Pentatricopeptide repeat (PPR-like) superfamily protein | 826774 | |
| ath | AT4G14050 | |
|
Pentatricopeptide repeat (PPR) superfamily protein | 827041 | IEA |
| ath | AT4G15520 | |
|
tRNA/rRNA methyltransferase (SpoU) family protein | 827225 | |
| ath | AT4G17590 | |
|
NOL1/NOP2/sun family protein | 827478 | |
| ath | AT4G17610 | |
|
tRNA/rRNA methyltransferase (SpoU) family protein | 827480 | |
| ath | AT4G18520 | |
|
Pentatricopeptide repeat (PPR) superfamily protein | 827584 | |
| ath | DOT4 | |
|
Pentatricopeptide repeat (PPR) superfamily protein | 827609 | |
| ath | MORF1 | |
|
multiple organellar RNA editing factor | 827747 | |
| ath | AT4G20920 | |
double-stranded RNA-binding domain (DsRBD)-containing protein | 827840 | ||
| ath | AT4G02940 | |
|
oxidoreductase, 2OG-Fe(II) oxygenase family protein | 828132 | |
| ath | AT4G01880 | |
|
methyltransferase | 828223 | |
| ath | RBP31 | |
|
31-kDa RNA binding protein | 828579 | IMP |
| ath | OTP70 | |
|
Tetratricopeptide repeat (TPR)-like superfamily protein | 828630 | IMP |
| ath | FIB2 | |
|
fibrillarin 2 | 828668 | |
| ath | AT4G26600 | |
|
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | 828767 | |
| ath | MEF29 | |
|
Pentatricopeptide repeat (PPR) superfamily protein | 829193 | |
| ath | AT4G35910 | |
|
Adenine nucleotide alpha hydrolases-like superfamily protein | 829746 | |
| ath | AT4G36390 | |
|
Methylthiotransferase | 829791 | |
| ath | AT4G37380 | |
|
Tetratricopeptide repeat (TPR)-like superfamily protein | 829892 | |
| ath | AT5G08180 | |
|
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 830714 | |
| ath | HEMC | |
|
hydroxymethylbilane synthase | 830724 | |
| ath | SLG1 | |
|
Tetratricopeptide repeat (TPR)-like superfamily protein | 830748 | |
| ath | MEF7 | |
|
Tetratricopeptide repeat (TPR)-like superfamily protein | 830856 | IMP |
| ath | AT5G12410 | |
|
THUMP domain-containing protein | 831116 | |
| ath | RARE1 | |
|
Pentatricopeptide repeat (PPR) superfamily protein | 831168 | IDA,IMP |
| ath | ABO1 | |
|
IKI3 family protein | 831213 | |
| ath | AT5G15810 | |
|
tRNA (guanine(26)-N(2))-dimethyltransferase | 831438 | |
| ath | VAR3 | |
|
zinc finger (Ran-binding) family protein | 831647 | |
| ath | EMB175 | |
|
Pentatricopeptide repeat (PPR) superfamily protein | 831717 | IEA |
| ath | AT5G01160 | |
|
RING/U-box superfamily protein | 831742 | |
| ath | AT5G18180 | |
|
H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein | 831936 | |
| ath | MEF18 | |
|
mitochondrial editing factor 18 | 832021 | |
| ath | EMB2820 | |
|
Cytidine/deoxycytidylate deaminase family protein | 832539 | |
| ath | AT5G24840 | |
|
tRNA (guanine-N-7) methyltransferase | 832553 | |
| ath | AT5G25030 | |
ATP-binding protein (DUF2431) | 832573 | ||
| ath | AGL26 | |
|
tRNA (cytidine(34)-2'-O)-methyltransferase | 832746 | |
| ath | AT5G40410 | |
|
Tetratricopeptide repeat (TPR)-like superfamily protein | 834039 | IEA |
| ath | AT5G42450 | |
|
Pentatricopeptide repeat (PPR) superfamily protein | 834252 | IEA |
| ath | MORF4 | |
|
high molecular weight subunit-like glutenin | 834507 | |
| ath | TRM10 | |
|
tRNA (guanine(9)-N1)-methyltransferase-like protein | 834819 | |
| ath | LPA66 | |
|
Pentatricopeptide repeat (PPR) superfamily protein | 834949 | IMP |
| ath | CP31B | |
|
chloroplast RNA-binding protein 31B | 835090 | IMP |
| ath | ELO3 | |
|
radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein | 835098 | |
| ath | EMB3141 | |
|
Pentatricopeptide repeat (PPR-like) superfamily protein | 835107 | IEA |
| ath | FIB1 | |
|
fibrillarin 1 | 835323 | |
| ath | MEF1 | |
|
mitochondrial RNAediting factor 1 | 835340 | |
| ath | AT5G54580 | |
|
RNA-binding (RRM/RBD/RNP motifs) family protein | 835546 | |
| ath | AT5G54880 | |
|
DTW domain-containing protein | 835579 | |
| ath | CNX5 | |
|
co-factor for nitrate, reductase and xanthine dehydrogenase 5 | 835604 | |
| ath | CRR21 | |
|
Tetratricopeptide repeat (TPR)-like superfamily protein | 835668 | |
| ath | AT5G56075 | |
methyltransferase small domain protein, putative (DUF2431) | 835706 | ||
| ath | OTP80 | |
|
Tetratricopeptide repeat (TPR)-like superfamily protein | 836038 | |
| ath | AT5G59600 | |
|
Tetratricopeptide repeat (TPR)-like superfamily protein | 836079 | IEA |
| ath | GR-RBP3 | |
|
glycine-rich RNA-binding protein 3 | 836224 | |
| ath | DIM1B | |
|
Ribosomal RNA adenine dimethylase family protein | 836768 | |
| ath | AT5G66520 | |
|
Tetratricopeptide repeat (TPR)-like superfamily protein | 836784 | |
| ath | PDE247 | |
|
Tetratricopeptide repeat (TPR)-like superfamily protein | 837083 | IMP |
| ath | MEF3 | |
|
Pentatricopeptide repeat (PPR) superfamily protein | 837123 | |
| ath | AT1G06710 | |
|
Tetratricopeptide repeat (TPR)-like superfamily protein | 837181 | |
| ath | AT1G09290 | |
|
uncharacterized protein | 837450 | |
| ath | AT1G09800 | |
|
Pseudouridine synthase family protein | 837510 | |
| ath | EMB3103 | |
|
Pentatricopeptide repeat (PPR) superfamily protein | 837634 | |
| ath | CRR22 | |
|
Pentatricopeptide repeat (PPR) superfamily protein | 837671 | |
| ath | MORF9 | |
|
plastid developmental protein DAG | 837685 | |
| ath | RPF1 | |
|
RNA processing FACTOR | 837825 | |
| ath | DRL1 | |
|
KTI12-like, chromatin associated protein | 837946 | |
| ath | AT1G15480 | |
|
Tetratricopeptide repeat (TPR)-like superfamily protein | 838118 | |
| ath | ECB2 | |
|
Tetratricopeptide repeat (TPR)-like superfamily protein | 838121 | IMP |
| ath | AT1G17630 | |
|
Pentatricopeptide repeat (PPR-like) superfamily protein | 838340 | IEA |
| ath | AT1G20230 | |
|
Pentatricopeptide repeat (PPR) superfamily protein | 838612 | IEA |
| ath | AT1G20370 | |
|
Pseudouridine synthase family protein | 838625 | |
| ath | AT1G23450 | |
|
PPR superfamily protein | 838953 | IEA |
| ath | AT1G01760 | |
|
denosine deaminases acting on tRNA | 839252 | |
| ath | NAF1 | |
|
nuclear assembly factor 1 | 839468 | |
| ath | TRM82 | |
|
Transducin/WD40 repeat-like superfamily protein | 839572 | |
| ath | TRM9 | |
|
RNA-binding (RRM/RBD/RNP motifs) family protein | 840048 | |
| ath | AT1G32580 | |
|
plastid developmental protein DAG | 840152 | |
| ath | AT1G33350 | |
|
Pentatricopeptide repeat (PPR) superfamily protein | 840229 | IEA |
| ath | AT1G34160 | |
|
Tetratricopeptide repeat (TPR)-like superfamily protein | 840315 | IEA |
| ath | AT1G36310 | |
|
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | 840538 | |
| ath | AT1G45231 | |
|
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | 841092 | |
| ath | DYW1 | |
|
Pentatricopeptide repeat (PPR) superfamily protein | 841167 | IDA |
| ath | emb2191 | |
|
Cytidine/deoxycytidylate deaminase family protein | 841237 | |
| ath | ELP2 | |
|
elongator protein 2 | 841378 | |
| ath | AT1G53260 | |
|
uncharacterized protein | 841759 | |
| ath | AT1G53600 | |
|
Tetratricopeptide repeat (TPR)-like superfamily protein | 841795 | IEA |
| ath | AT1G55790 | |
ferredoxin-fold anticodon-binding domain protein | 842028 | ||
| ath | CRR28 | |
|
Tetratricopeptide repeat (TPR)-like superfamily protein | 842263 | |
| ath | AT1G60230 | |
|
Radical SAM superfamily protein | 842318 | |
| ath | MEF9 | |
|
mitochondrial editing factor 9 | 842523 | |
| ath | AT1G64310 | |
|
Tetratricopeptide repeat (TPR)-like superfamily protein | 842737 | |
| ath | TADA | |
|
tRNA arginine adenosine deaminase | 843202 | |
| ath | EMB25 | |
|
DEAD/DEAH box helicase | 843343 | |
| ath | AT1G71420 | |
|
Tetratricopeptide repeat (TPR)-like superfamily protein | 843483 | IEA |
| ath | AT1G72530 | |
|
plastid developmental protein DAG | 843585 | |
| ath | AT1G73530 | |
|
RNA-binding (RRM/RBD/RNP motifs) family protein | 843687 | |
| ath | GR-RBP5 | |
|
glycine-rich RNA-binding protein 5 | 843763 | |
| ath | AT1G74350 | |
|
Intron maturase, type II family protein | 843776 | |
| ath | OTP87 | |
|
pentatricopeptide (PPR) repeat-containing protein | 843800 | |
| ath | AT1G74630 | |
|
Tetratricopeptide repeat (TPR)-like superfamily protein | 843802 | IEA |
| ath | AT1G76170 | |
|
2-thiocytidine tRNA biosynthesis protein, TtcA | 843949 | |
| ath | AT1G03502 | |
3766647 | |||
| ath | AT1G03506 | |
3766648 | |||
| ath | AT1G03743 | |
|
3766653 | ||
| ath | AT1G03746 | |
3766654 | |||
| ath | AT1G03935 | |
3766655 | |||
| ath | AT1G07702 | |
3766675 | |||
| ath | SNOR111 | |
3766705 | |||
| ath | AT1G12015 | |
3766706 | |||
| ath | AT1G19373 | |
3766754 | |||
| ath | AT1G19376 | |
3766755 | |||
| ath | AT1G20015 | |
3766761 | |||
| ath | SNOR95 | |
3766797 | |||
| ath | AT1G32385 | |
3766878 | |||
| ath | AT1G74453 | |
|
3767696 | ||
| ath | AT1G74456 | |
|
3767697 | ||
| ath | AT1G75163 | |
3767701 | |||
| ath | AT1G75166 | |
|
3767702 | ||
| ath | AT2G17295 | |
3767923 | |||
| ath | AT2G05765 | |
|
3768358 | ||
| ath | AT2G35382 | |
3768581 | |||
| ath | AT2G35384 | |
3768582 | |||
| ath | AT2G35387 | |
3768583 | |||
| ath | AT2G35742 | |
3768584 | |||
| ath | AT2G35744 | |
3768585 | |||
| ath | AT2G35747 | |
3768586 | |||
| ath | AT2G20721 | |
|
3768706 | ||
| ath | AT2G20722 | |
3768707 | |||
| ath | AT2G20723 | |
3768708 | |||
| ath | AT2G43137 | |
3768731 | |||
| ath | AT2G43138 | |
3768732 | |||
| ath | AT2G43139 | |
3768733 | |||
| ath | AT2G43141 | |
3768734 | |||
| ath | AT3G13525 | |
3768827 | |||
| ath | AT3G14475 | |
3768847 | |||
| ath | AT3G01313 | |
3768851 | |||
| ath | AT3G01316 | |
3768852 | |||
| ath | AT3G21805 | |
|
3768883 | ||
| ath | AT3G24612 | |
3768921 | |||
| ath | AT3G24614 | |
3768922 | |||
| ath | AT3G24615 | |
3768923 | |||
| ath | AT3G27865 | |
3768959 | |||
| ath | AT3G47342 | |
3769676 | |||
| ath | AT3G47347 | |
3769677 | |||
| ath | AT3G47348 | |
|
3769678 | ||
| ath | AT3G50825 | |
|
3769700 | ||
| ath | AT3G58193 | |
3769736 | |||
| ath | AT3G58196 | |
3769737 | |||
| ath | U60.2F | |
3769900 | |||
| ath | AT4G02555 | |
3770154 | |||
| ath | SNOR37-2 | |
|
3770243 | ||
| ath | AT4G26365 | |
3770269 | |||
| ath | U49.1 | |
3770292 | |||
| ath | AT4G13245 | |
3770540 | |||
| ath | AT4G03295 | |
3770541 | |||
| ath | AT4G39361 | |
|
3770594 | ||
| ath | AT4G39363 | |
|
3770595 | ||
| ath | AT4G39364 | |
|
3770596 | ||
| ath | AT4G39366 | |
|
3770597 | ||
| ath | AT5G13225 | |
3770670 | |||
| ath | SNOR77 | |
3770695 | |||
| ath | AT5G44286 | |
3771426 | |||
| ath | SNOR30 | |
3771486 | |||
| ath | U60.1F | |
3771493 | |||
| ath | U3B | |
3771501 | |||
| ath | U3D | |
3771503 | |||
| ath | AT5G58595 | |
3771531 | |||
| ath | AT5G66562 | |
3771567 | |||
| ath | AT5G66564 | |
3771568 | |||
| ath | AT5G66567 | |
3771569 | |||
| ath | AT2G45695 | |
|
Ubiquitin related modifier 1 | 5007965 | |
| ath | AT4G21065 | |
|
Tetratricopeptide repeat (TPR)-like superfamily protein | 5008150 | IEA |
| ath | AT3G61113 | |
Ubiquitin related modifier 1 | 6241165 | ||
| ath | AT1G30545 | |
|
S-adenosyl-L-methionine-dependent methyltransferase superfamily protein | 28717281 | |
| ath | AT1G55800 | |
uncharacterized protein | 28717363 | ||
| ath | AT1G55803 | |
ferredoxin-fold anticodon-binding domain protein | 28717364 | ||
| ath | AT2G11045 | |
ATP-binding protein | 28718246 |
